| IGR sequence: | igr783#chr2#x1=4089755#l=13602 |
|---|---|
| Mature miRNA sequence: | UCUUCCACAGCUUUCUUGAACUGCA |
| encoded miRNA: | MIR14 |
| Precursor location: | 1046 - 1180 (negative strand) |
| precursor length: | 135 (37 basepairs) |
| MIR position: | 1 - 25 (1156 - 1180) |
| MIR length: | 25 (22 paired bases) |
| miRNA location TIGR v3: | chr2:4090800<4090934 |
| miRNA location TIGR v5: | chr2:4149413<4149547 |
| Folding energy: | -40.30 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster028 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** *****
UCUUCCACAG CUUUCUUGAA CUGCAAAACU UCUUCAGAUU UUUUUUUUUU UCUUUUGAUA 60
::(((((((( ((((-((((( (((((((-(- ((--((((,, ,,,,,,,,,, <<____>>,,
UCUCUUACGC AUAAAAUAGU GAUUUUCUUC AUAUCUCUGC UCGAUUGAUU UGCGGUUCAA 120
,,,,,,,,,, ,,,,,,,,<< <<______>> >>,,,))))- --))--)-)) ))))))))))
UAAAGCUGUG GGAAG 135
-))))))))) )))::
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g07530.1 | 68408.m00734 scarecrow-like transcription factor 14 (SCL14) | 4 | 1 |
Rice homologs
- gnl|BL_ORD_ID|1525_20451-20588_1-25
- gnl|BL_ORD_ID|696_38560-38659_1-25
- gnl|BL_ORD_ID|696_38560+38659_76-100