| IGR sequence: | igr5553#chr1#x1=25868910#l=5170 |
|---|---|
| Mature miRNA sequence: | UGAAGUGUUUGGGGGAACUC |
| encoded miRNA: | MIR64 |
| Precursor location: | 3668 - 3742 (negative strand) |
| precursor length: | 75 (31 basepairs) |
| MIR position: | 56 - 75 (3668 - 3687) |
| MIR length: | 20 (18 paired bases) |
| miRNA location TIGR v3: | chr1:25872577<25872651 |
| miRNA location TIGR v5: | chr1:26276449<26276523 |
| Folding energy: | -38.20 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster030 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
*****
GAGUUCCUCU GAGCACUUCA UUGGAGAUAC AAUUUUUUAU AAAAUAGUUU UCUACUGAAG 60
(((((((((- -((((((((( -((((((-(( -(((((____ )))))-)))) ))))-)))))
********** *****
UGUUUGGGGG AACUC 75
))))--)))) )))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At2g28780.1 | 68409.m03167 expressed protein | 2 | 1 |
| 2 | At3g22890.1 | 68410.m02623 ATP sulfurylase -related | 2 | 1 |
| 3 | At4g14680.1 | 68411.m02044 ATP-sulfurylase | 2 | 1 |
| 4 | At5g10180.1 | 68412.m01087 sulfate transporter | 2 | 1 |
| 5 | At5g43780.1 | 68412.m04828 ATP sulfurylase precursor (gb|AAD26634.1) | 1 | 2 |
Rice homologs
- gnl|BL_ORD_ID|2328_172112+172322_1-20
- gnl|BL_ORD_ID|2328_172112-172461_331-350
- gnl|BL_ORD_ID|2328_172112-172322_192-211
- gnl|BL_ORD_ID|2328_172112-172179_49-68
- gnl|BL_ORD_ID|2328_172255+172322_1-20
- gnl|BL_ORD_ID|2328_172255-172322_49-68
- gnl|BL_ORD_ID|2328_171833+172179_1-20
- gnl|BL_ORD_ID|2328_171833+171898_1-20
- gnl|BL_ORD_ID|2328_171833-171898_47-66
- gnl|BL_ORD_ID|2328_171833-172179_328-347
- gnl|BL_ORD_ID|2328_172534+172815_1-20
- gnl|BL_ORD_ID|2319_11708+11918_1-20
- gnl|BL_ORD_ID|2319_11708-12057_331-350
- gnl|BL_ORD_ID|2319_11708-11918_192-211
- gnl|BL_ORD_ID|2319_11708-11775_49-68
- gnl|BL_ORD_ID|2319_11851+11918_1-20
- gnl|BL_ORD_ID|2319_11851-11918_49-68
- gnl|BL_ORD_ID|2319_11429+11775_1-20
- gnl|BL_ORD_ID|2319_11429+11494_1-20
- gnl|BL_ORD_ID|2319_11429-11494_47-66
- gnl|BL_ORD_ID|2319_11429-11775_328-347
- gnl|BL_ORD_ID|2319_12130+12411_1-20
- gnl|BL_ORD_ID|2693_32562-32911_331-350
- gnl|BL_ORD_ID|2693_32562-32629_49-68
- gnl|BL_ORD_ID|2693_32562+32629_1-20
- gnl|BL_ORD_ID|2693_32562+32911_1-20
- gnl|BL_ORD_ID|2693_32278-32343_47-66
- gnl|BL_ORD_ID|2693_32278+32593_1-20
- gnl|BL_ORD_ID|2693_32848-33201_335-354
- gnl|BL_ORD_ID|2693_32848-33058_192-211
- gnl|BL_ORD_ID|2693_32848-32915_49-68
- gnl|BL_ORD_ID|2693_32848+33058_1-20
- gnl|BL_ORD_ID|2693_32848+33201_1-20
- gnl|BL_ORD_ID|2693_32705-32772_49-68
- gnl|BL_ORD_ID|2693_32705-32915_192-211
- gnl|BL_ORD_ID|2693_32705+32772_1-20
- gnl|BL_ORD_ID|2693_32705+32915_1-20
- gnl|BL_ORD_ID|2693_32988-33338_332-351
- gnl|BL_ORD_ID|2693_32988-33053_47-66
- gnl|BL_ORD_ID|2693_32988-33195_189-208
- gnl|BL_ORD_ID|2693_32988+33195_1-20
- gnl|BL_ORD_ID|2693_32988+33053_1-20
- gnl|BL_ORD_ID|2693_32988+33338_1-20
- gnl|BL_ORD_ID|2437_51501-51850_331-350
- gnl|BL_ORD_ID|2437_51501-51568_49-68
- gnl|BL_ORD_ID|2437_51501+51850_1-20
- gnl|BL_ORD_ID|2437_51501+51568_1-20
- gnl|BL_ORD_ID|2437_51217-51282_47-66
- gnl|BL_ORD_ID|2437_51217+51532_1-20
- gnl|BL_ORD_ID|2437_51787-52140_335-354
- gnl|BL_ORD_ID|2437_51787-51997_192-211
- gnl|BL_ORD_ID|2437_51787-51854_49-68
- gnl|BL_ORD_ID|2437_51787+51997_1-20
- gnl|BL_ORD_ID|2437_51787+52140_1-20
- gnl|BL_ORD_ID|2437_51644-51711_49-68
- gnl|BL_ORD_ID|2437_51644-51854_192-211
- gnl|BL_ORD_ID|2437_51644+51711_1-20
- gnl|BL_ORD_ID|2437_51644+51854_1-20
- gnl|BL_ORD_ID|2437_51927-52277_332-351
- gnl|BL_ORD_ID|2437_51927-51992_47-66
- gnl|BL_ORD_ID|2437_51927-52134_189-208
- gnl|BL_ORD_ID|2437_51927+52134_1-20
- gnl|BL_ORD_ID|2437_51927+51992_1-20
- gnl|BL_ORD_ID|2437_51927+52277_1-20
- gnl|BL_ORD_ID|986_79666-79757_73-92
- gnl|BL_ORD_ID|986_78996+79087_1-20
- gnl|BL_ORD_ID|986_78996-79247_233-252
- gnl|BL_ORD_ID|986_78996-79087_73-92
- gnl|BL_ORD_ID|986_79171+79422_1-20
- gnl|BL_ORD_ID|986_79171-79247_58-77
- gnl|BL_ORD_ID|986_79171-79422_233-252
- gnl|BL_ORD_ID|986_79504+79757_1-20
- gnl|BL_ORD_ID|986_79504-79582_60-79
- gnl|BL_ORD_ID|986_79504-79757_235-254
- gnl|BL_ORD_ID|986_79331+79422_1-20
- gnl|BL_ORD_ID|986_79331+79582_1-20
- gnl|BL_ORD_ID|986_79331-79582_233-252
- gnl|BL_ORD_ID|986_79331-79422_73-92
- gnl|BL_ORD_ID|986_78821+79087_1-20
- gnl|BL_ORD_ID|986_78821-79087_248-267
- gnl|BL_ORD_ID|986_78821-78912_73-92