IGR sequence:igr1656#chr3#x1=6684108#l=3037
Mature miRNA sequence:UCAUUACUUCCAAAUACAGA
encoded miRNA:MIR42
Precursor location:1861 - 2210 (negative strand)
precursor length:350 (117 basepairs)
MIR position:331 - 350 (1861 - 1880)
MIR length:20 (20 paired bases)
miRNA location TIGR v3:chr3:6685968<6686317
miRNA location TIGR v5:chr3:6685968<6686317
Folding energy:-144.20
BLAST hit against RFAM Atha miRNAs:none
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

                                                                  
UCUGUAUUUG GAAGUAAUGA UCUUAGACUC CACGCGACAG UGUUCUUUAC UCCUACCAAA    60
(((((((((( (((((((((( (((((((((( ((((((((-( (((((((((, ,,,,,,,,,, 

                                                                  
AAAAAAGAAA AAACUAUAAA CUAUGAAUAA AAUAUGACCA AAACAUGUAG UUAAUUGGGU   120
,,,,,,<<<- --<<<-<-<< <-<<<<<--- -<<<--<<<< -<<<<<<<<- <<<<<<<<<< 

                                                                  
UGUGCUAUUU UUAUCAUUAU GUUAUCACCC GAAAUUUGAA UAUAUGUUAU GGUUGUGUGA   180
-<<<-<<<__ ________>> >->>>->>>> >>--->>>>- >>>>>>>>-> >>>-->>>-- 

                                                                  
CUUUUAUGUU AAAAGUGUUC CCUCAUCAGA UAGAAGAAGU GGUGGUGCUU GCUUUCUUUU   240
-->>>>>>>> ->->>>->>> ,,,,,,,,,, ,,<<<<<-<< <<<<,,[[[[ [[--[[---- 

                                                                  
UGGGAGCCCA UUUUGGUUGC AAGCCAAUAA GAAUAUCACA CCGCUCUUCG AAACAAAACA   300
[[[____]]] ----]]--]] ]]]],,,,,, [_____],>> >>>>>>>>>, ,,,,,,,,,, 

                                 ********** ********** 
AUAAAGAACA CAGUCGCGUG GAGUCUAAGA UCAUUACUUC CAAAUACAGA   350
,))))))))) )-)))))))) )))))))))) )))))))))) ))))))))))

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs