IGR sequence: | igr2826#chr5#x1=14046022#l=5701 |
---|---|
Mature miRNA sequence: | CUCCCUCUGUUUCAUAAUAUAAGU |
encoded miRNA: | MIR25 |
Precursor location: | 3185 - 3386 (positive strand) |
precursor length: | 202 (73 basepairs) |
MIR position: | 1 - 24 (3185 - 3208) |
MIR length: | 24 (23 paired bases) |
miRNA location TIGR v3: | chr5:14049206>14049407 chr5:14108506>14108707 |
miRNA location TIGR v5: | chr5:14458264>14458465 chr5:14517564>14517765 |
Folding energy: | -58.90 |
BLAST hit against RFAM Atha miRNAs: | none |
Belongs to miRNAs-targets cluster: | cluster018 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** **** CUCCCUCUGU UUCAUAAUAU AAGUUGUUUU AGACCAAUUU UUUUGUUUUA CAAGAAAAGU 60 (((((((((( ((-((((((( (((((((((( ((,,,,,<<< <<<<<_____ >>>>>>>>,< UAUUUUCUAG UUUCUAUGCA AAUUAUAUGU UACUUUAAUA UUUUAUGAUU ACUUAUAUUA 120 <<<<<<--<< <<<----<<- <<<<<<<-<- -<<<--<<<< ---<<<<<__ __>>>>>->> UUUAGUCUCU UUUAUGAUUG GUUGAACUUU UUCAAAGUAA AUAUUCUUAA CUGAAACAAC 180 >>->>>-->- -->>>>>>>- >>->>>>>-- --->>>>>>> ,,,,,,,,,, )))))))))) UUAUAUUGUA AAACGGAGGG AG 202 )))))))))- )))))))))) ))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
Nr. | Gene | Description | mismatches | miRNAs |
---|---|---|---|---|
1 | At5g52870.1 | 68412.m05931 expressed protein | 4 | 1 |
Rice homologs
- gnl|BL_ORD_ID|916_41795+42035_1-24
- gnl|BL_ORD_ID|916_41795-42035_218-241
- gnl|BL_ORD_ID|1501_132024-132269_223-246
- gnl|BL_ORD_ID|3581_50166+50315_1-24
- gnl|BL_ORD_ID|3581_50166-50315_127-150
- gnl|BL_ORD_ID|3538_166407+166561_1-24
- gnl|BL_ORD_ID|3538_166407-166562_133-156
- gnl|BL_ORD_ID|3492_35857-35976_97-120
- gnl|BL_ORD_ID|3492_35857+35976_1-24
- gnl|BL_ORD_ID|3475_24243+24386_1-24
- gnl|BL_ORD_ID|3408_48925-49072_125-148
- gnl|BL_ORD_ID|3408_48925+49072_1-24
- gnl|BL_ORD_ID|3354_5862-5993_109-132
- gnl|BL_ORD_ID|3354_5862+5993_1-24
- gnl|BL_ORD_ID|3162_72056-72296_218-241
- gnl|BL_ORD_ID|3162_72056+72296_1-24
- gnl|BL_ORD_ID|3104_49294-49442_126-149
- gnl|BL_ORD_ID|3104_49294+49442_1-24
- gnl|BL_ORD_ID|3099_101863-102018_133-156
- gnl|BL_ORD_ID|3099_101863+102017_1-24
- gnl|BL_ORD_ID|3062_125251-125436_163-186
- gnl|BL_ORD_ID|3059_89335+89492_1-24
- gnl|BL_ORD_ID|3059_89335-89492_135-158
- gnl|BL_ORD_ID|3000_138333+138470_1-24
- gnl|BL_ORD_ID|3000_138333-138470_115-138
- gnl|BL_ORD_ID|2972_145512-145787_253-276
- gnl|BL_ORD_ID|2926_6156-6341_163-186
- gnl|BL_ORD_ID|2903_31850-32001_129-152
- gnl|BL_ORD_ID|2903_31850+32001_1-24
- gnl|BL_ORD_ID|2880_11285-11404_97-120
- gnl|BL_ORD_ID|2880_11285+11404_1-24
- gnl|BL_ORD_ID|2863_103819-103968_127-150
- gnl|BL_ORD_ID|2863_103819+103968_1-24
- gnl|BL_ORD_ID|2421_109708-109857_127-150
- gnl|BL_ORD_ID|2421_109708+109857_1-24
- gnl|BL_ORD_ID|2382_110630-110753_101-124
- gnl|BL_ORD_ID|2382_110630+110753_1-24
- gnl|BL_ORD_ID|2376_12717+12868_1-24
- gnl|BL_ORD_ID|2376_12717-12868_129-152
- gnl|BL_ORD_ID|2370_4636+4889_1-24
- gnl|BL_ORD_ID|2370_4636-4890_232-255
- gnl|BL_ORD_ID|2270_64847-65015_146-169
- gnl|BL_ORD_ID|2270_64847+65014_1-24
- gnl|BL_ORD_ID|2270_39713-39881_146-169
- gnl|BL_ORD_ID|2270_39713+39880_1-24
- gnl|BL_ORD_ID|2190_163022-163250_206-229
- gnl|BL_ORD_ID|2190_163022+163249_1-24
- gnl|BL_ORD_ID|2115_56488-56637_127-150
- gnl|BL_ORD_ID|2115_56488+56637_1-24
- gnl|BL_ORD_ID|2096_43700-43985_263-286