| IGR sequence: | igr4835#chr1#x1=22526634#l=6090 |
|---|---|
| Mature miRNA sequence: | UGAUUGAGCCGUGCCAAUAUC |
| encoded miRNA: | MIR46 |
| Precursor location: | 3258 - 3336 (negative strand) |
| precursor length: | 79 (32 basepairs) |
| MIR position: | 59 - 79 (3258 - 3278) |
| MIR length: | 21 (19 paired bases) |
| miRNA location TIGR v3: | chr1:22529891<22529969 |
| miRNA location TIGR v5: | chr1:22933763<22933841 |
| Folding energy: | -44.60 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster023 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
**
GAUAUUGGUG CGGUUCAAUC AGAAAACCGU ACUCUUUUGU UUUAAAGAUC GGUUUAUUUG 60
((((((((-- (((((((((( (((((((((- --(((((___ ___)))))-) )))))-))))
********** *********
AUUGAGCCGU GCCAAUAUC 79
)))))))))- -))))))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At2g45160.1 | 68409.m05078 scarecrow transcription factor family | 1 | 7 |
| 2 | At3g60630.1 | 68410.m06267 scarecrow transcription factor family | 1 | 7 |
| 3 | At4g00150.1 | 68411.m00015 scarecrow-like transcription factor 6 (SCL6) | 1 | 7 |
Rice homologs
- gnl|BL_ORD_ID|2822_24365+24463_1-21
- gnl|BL_ORD_ID|2822_24365-24463_79-99
- gnl|BL_ORD_ID|0_119694-119808_95-115
- gnl|BL_ORD_ID|0_119694+119808_1-21