| IGR sequence: | igr2413#chr1#x1=10226044#l=3960 |
|---|---|
| Mature miRNA sequence: | CUGCCAAAGGAGAUUUGCCC |
| encoded miRNA: | MIR27 |
| Precursor location: | 1028 - 1126 (positive strand) |
| precursor length: | 99 (39 basepairs) |
| MIR position: | 80 - 99 (1107 - 1126) |
| MIR length: | 20 (19 paired bases) |
| miRNA location TIGR v3: | chr1:10227071>10227169 |
| miRNA location TIGR v5: | chr1:10227071>10227169 |
| Folding energy: | -41.80 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster020 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
GGGUAAGAUC UCUAUUGGCA GGAAACCAUU ACUUAGAUCU UUGCAUCUCU UUAUGCAUUG 60
(((((-(((( (((-(((((( ((-((((((( (-(((((-(- -(((((____ __)))))--)
* ********** *********
CUUUUAAUUA GUGAGUUAUC UGCCAAAGGA GAUUUGCCC 99
--)))))-)) )))-)))-)) ))))))-))) )))))))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At2g33770.1 | 68409.m03744 ubiquitin-conjugating enzyme family | 2 | 5 |
| 2 | At2g33770.1 | 68409.m03744 ubiquitin-conjugating enzyme family | 2 | 5 |
| 3 | At2g33770.1 | 68409.m03744 ubiquitin-conjugating enzyme family | 1 | 5 |
| 4 | At2g33770.1 | 68409.m03744 ubiquitin-conjugating enzyme family | 2 | 5 |
| 5 | At2g33770.1 | 68409.m03744 ubiquitin-conjugating enzyme family | 2 | 5 |
Rice homologs
- gnl|BL_ORD_ID|560_99071-99164_1-20
- gnl|BL_ORD_ID|560_99071+99164_75-94