| IGR sequence: | igr2739#chr4#x1=13510141#l=1559 |
|---|---|
| Mature miRNA sequence: | CAAAAGAGAUAGUGUUUUUG |
| encoded miRNA: | MIR2 |
| Precursor location: | 893 - 1173 (negative strand) |
| precursor length: | 281 (91 basepairs) |
| MIR position: | 1 - 20 (1154 - 1173) |
| MIR length: | 20 (17 paired bases) |
| miRNA location TIGR v3: | chr4:13511033<13511313 |
| miRNA location TIGR v5: | chr4:14546039<14546319 |
| Folding energy: | -77.30 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster014 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** **********
CAAAAGAGAU AGUGUUUUUG AUGGACUUAA AAGUGAUGGU GUUGACAAAU AUGGUGCUUA 60
((((-((((( -(-((((((( ,<<<<---<< <<<<<<---- -<<<<----- <<<<-<<<<<
UGAAGCAAGU GCGGCAGUGA GAAGGGAUUG AGGAUUUGAG UUGCAGAAAA AAUUGUUGAC 120
<<,,[[____ ]],[[[-[[[ ---[[[[[[[ [[[,,,,,,{ {{{{{{____ _____}}}-}
AACGAUGGUG UUGUUAUCAA CACUAUAACC UCUAACAAGG GGUAAAACCG UCAUAUCCCC 180
}}},{{{{{{ {{{____}}} }}}}}},{{{ {{{____}}} }}},,,,]]- ]]]-]]]]]-
UAUCAAUAUA UGCUUAUUUC CAUAAGUCCA UUCAAAAAAU UCAUUUUUUC UAAUUAUUGG 240
--]]]----- ]]],,,,,,, >>>>>>>>>> >>>>>----- >>>>>>>>>> >>,,,{{{{{
GCUAAAAUGU GUCCAAUCUU ACAAAAGCCC CAUCUUAUUU G 281
{{________ }}}}}}},,, ,)))))))-) -)))))-))) )
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At4g04910.1 | 68411.m00626 component of vesicle-mediated transport -related | 2 | 1 |
Rice homologs
- gnl|BL_ORD_ID|2918_32807-32972_1-20
- gnl|BL_ORD_ID|2775_113543-113708_1-20