| IGR sequence: | igr2356#chr3#x1=9872012#l=10062 |
|---|---|
| Mature miRNA sequence: | AGGCAAGUCAUCCUUGGCUACC |
| encoded miRNA: | MIR44 |
| Precursor location: | 1235 - 1364 (positive strand) |
| precursor length: | 130 (41 basepairs) |
| MIR position: | 109 - 130 (1343 - 1364) |
| MIR length: | 22 (18 paired bases) |
| miRNA location TIGR v3: | chr3:9873246>9873375 |
| miRNA location TIGR v5: | chr3:9873236>9873365 |
| Folding energy: | -48.30 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster008 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
GAUAGCCAAG GAGACUGCCU GAUAUCUUUU UUAUAAGCAA AAUGGUCAUU GCUUGAUACA 60
::(((((((( (((((((((( (((-(((((, ,,,<<<<<<< ________>> >>>>>,,,,,
** **********
ACUUAUAGUG ACUUCAAACA AGACACUAAA CAUUUUACAC AAAGAGUCAG GCAAGUCAUC 120
,,,,,<<<<< -<<<_____> >>->>>>>,, ,,,,,,,,,, )))))))))) ))-))))-))
**********
CUUGGCUACC 130
))))))))::
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g54150.1 | 68408.m05663 zinc finger (C3HC4-type RING finger) protein family | 3 | 8 |
Rice homologs
- gnl|BL_ORD_ID|2154_158028-158181_1-22
- gnl|BL_ORD_ID|2154_158030+158181_131-152
- gnl|BL_ORD_ID|323_84895+85046_131-152
- gnl|BL_ORD_ID|323_84893-85046_1-22