| IGR sequence: | igr2102#chr2#x1=10621377#l=6616 |
|---|---|
| Mature miRNA sequence: | UGACAGAAGAGAGUGAGCACAC |
| encoded miRNA: | MIR17 |
| Precursor location: | 3562 - 3643 (negative strand) |
| precursor length: | 82 (32 basepairs) |
| MIR position: | 1 - 22 (3622 - 3643) |
| MIR length: | 22 (20 paired bases) |
| miRNA location TIGR v3: | chr2:10624938<10625019 |
| miRNA location TIGR v5: | chr2:10683551<10683632 |
| Folding energy: | -41.70 |
| BLAST hit against RFAM Atha miRNAs: | ath-MIR156a |
| Belongs to miRNAs-targets cluster: | cluster019 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** **
UGACAGAAGA GAGUGAGCAC ACAAAGGCAA UUUGCAUAUC AUUGCACUUG CUUCUCUUGC 60
:((((((((( (((((((((( -((((((((( --((((____ __))))-))) )))---)))-
GUGCUCACUG CUCUUUCUGU CA 82
)))))))))- )))-)))))) ):
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g27360.1 | 68408.m03023 squamosa-promoter binding protein 2 -related | 3 | 6 |
| 2 | At1g27370.1 | 68408.m03024 squamosa-promoter binding protein 2 -related | 3 | 6 |
| 3 | At1g53160.1 | 68408.m05523 transcription factor -related | 2 | 8 |
| 4 | At1g69170.1 | 68408.m07265 squamosa-promoter binding protein -related | 3 | 6 |
| 5 | At2g33810.1 | 68409.m03749 squamosa-promoter binding protein -related | 3 | 4 |
| 6 | At2g42200.1 | 68409.m05466 squamosa-promoter binding protein -related | 2 | 8 |
| 7 | At2g42200.2 | 68409.m05467 squamosa-promoter binding protein -related | 2 | 8 |
| 8 | At3g57920.1 | 68410.m05967 squamosa promoter-binding protein homolog | 2 | 8 |
| 9 | At5g43270.1 | 68412.m07892 squamosa promoter binding protein-related 2 (emb|CAB56576.1) | 3 | 5 |
| 10 | At5g43270.2 | 68412.m07893 squamosa promoter binding protein-related 2 (emb|CAB56576.1) | 3 | 5 |
| 11 | At5g50570.1 | 68412.m07940 expressed protein | 2 | 8 |
| 12 | At5g50570.2 | 68412.m07941 expressed protein | 2 | 8 |
| 13 | At5g50670.1 | 68412.m05668 expressed protein | 2 | 8 |
Rice homologs
- gnl|BL_ORD_ID|2522_50865-50950_1-22
- gnl|BL_ORD_ID|2522_50865+50950_65-86
- gnl|BL_ORD_ID|640_18719-18804_1-22
- gnl|BL_ORD_ID|640_18719+18804_65-86
- gnl|BL_ORD_ID|2458_35999+36087_68-89
- gnl|BL_ORD_ID|2458_35999-36087_1-22
- gnl|BL_ORD_ID|2094_35660-35745_1-22
- gnl|BL_ORD_ID|2094_35660+35745_65-86
- gnl|BL_ORD_ID|2094_35665+35745_60-81
- gnl|BL_ORD_ID|2094_35499-35745_1-22
- gnl|BL_ORD_ID|2094_35500-35745_1-22
- gnl|BL_ORD_ID|1148_144400+144488_68-89
- gnl|BL_ORD_ID|1148_144400-144488_1-22
- gnl|BL_ORD_ID|342_115838-115921_1-22
- gnl|BL_ORD_ID|342_115838+115921_63-84
- gnl|BL_ORD_ID|342_115843+115921_58-79
- gnl|BL_ORD_ID|342_115786+115921_115-136
- gnl|BL_ORD_ID|62_958-1204_1-22
- gnl|BL_ORD_ID|62_959-1204_1-22
- gnl|BL_ORD_ID|62_1119+1204_65-86
- gnl|BL_ORD_ID|62_1124+1204_60-81
- gnl|BL_ORD_ID|62_1119-1204_1-22