IGR sequence:igr4121#chr2#x1=19115407#l=13764
Mature miRNA sequence:CUUCGGACCAGGCUUCAUUCCCC
encoded miRNA:MIR48
Precursor location:9177 - 9312 (positive strand)
precursor length:136 (49 basepairs)
MIR position:114 - 136 (9290 - 9312)
MIR length:23 (18 paired bases)
miRNA location TIGR v3:chr2:19124583>19124718
miRNA location TIGR v5:chr2:19183196>19183331
Folding energy:-56.40
BLAST hit against RFAM Atha miRNAs:ath-MIR166a
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

                                                                  
GGGGACUGUU GUCUGGCUCG AGGACUCUGG CUCGCUCUAU UCAUGUUGGA UCUCUUUCGA    60
(((((-((-- ((((((--(( (((((-(((( ---((((((- (((<<<<<<< <<______>> 

                                                          ******* 
UCUAACAAUC GAAUUGAACC UUCAGAUUUC AGAUUUGAUU AGGGUUUUAG CGUCUUCGGA   120
>>>>>>>,,, <<<<<<<___ _>>>>-->>> ,,,,,)))-) )))))-)))) -)))))))-- 

********** ******
CCAGGCUUCA UUCCCC  136
))))))--)) -)))))

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs