| IGR sequence: | igr1987#chr3#x1=8101048#l=11724 |
|---|---|
| Mature miRNA sequence: | UGAAGCUGCCAGCAUGAUCUAA |
| encoded miRNA: | MIR54 |
| Precursor location: | 7050 - 7150 (positive strand) |
| precursor length: | 101 (39 basepairs) |
| MIR position: | 1 - 22 (7050 - 7071) |
| MIR length: | 22 (20 paired bases) |
| miRNA location TIGR v3: | chr3:8108097>8108197 |
| miRNA location TIGR v5: | chr3:8108097>8108197 |
| Folding energy: | -43.50 |
| BLAST hit against RFAM Atha miRNAs: | ath-MIR167a |
| Belongs to miRNAs-targets cluster: | cluster029 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** **
UGAAGCUGCC AGCAUGAUCU AAUUAGCUUU CUUUAUCCUU UGUUGUGUUU CAUGACGAUG 60
:((((((((- (((((((((( ((((((((-( ((((--((-( (((--((___ ))--))))-)
GUUAAGAGAU CAGUCUCGAU UAGAUCAUGU UCGCAGUUUC A 101
)---)))))- -))-))-))) )))))))))) )-)))))))) :
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At5g37020.1 | 68412.m03986 auxin response transcription factor(ARF8) | 3 | 1 |
Rice homologs
- gnl|BL_ORD_ID|1020_47684-47810_106-127
- gnl|BL_ORD_ID|1020_47684+47810_1-22