IGR sequence:igr5885#chr1#x1=27307304#l=7297
Mature miRNA sequence:UUGGAUUGAAGGGAGCUCUACAUCU
encoded miRNA:MIR41
Precursor location:5715 - 5906 (negative strand)
precursor length:192 (69 basepairs)
MIR position:168 - 192 (5715 - 5739)
MIR length:25 (22 paired bases)
miRNA location TIGR v3:chr1:27313018<27313209
miRNA location TIGR v5:chr1:27716890<27717081
Folding energy:-78.80
BLAST hit against RFAM Atha miRNAs:ath-MIR159a
Belongs to miRNAs-targets cluster:none

Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.

                                                                  
GGAAGUAGAG CUCCUUAAAG UUCAAACAUG AGUUGAGCAG GGUAAAGAAA AGCUGCUAAG    60
(((-(((((( ((((((--(( ((((((---( (((-(((((( (((((---(( ((((-((-(( 

                                                                  
CUAUGGAUCC CAUAAGCCCU AAUCCUUGUA AAGUAAAAAA GGAUUUGGUU AUAUGGAUUG   120
-((((-(--( ((((((((-- (((((((___ ________)) )))))-)))) -)))))--)- 

                                                   *** ********** 
CAUAUCUCAG GAGCUUUAAC UUGCCCUUUA AUGGCUUUUA CUCUUCUUUG GAUUGAAGGG   180
))))-))-)) -))))))--- )))))))--- ---))))--) )))---)))) ))))--)))) 

********** **
AGCUCUACAU CU  192
))))))))-) ))

Postscript file CT file PNG file fasta file Stockholm file

Targets:
No Targets found for this miRNA

Rice homologs