| IGR sequence: | igr2953#chr2#x1=14363467#l=4130 |
|---|---|
| Mature miRNA sequence: | CUUAUAUUAUAAAACGGAGG |
| encoded miRNA: | MIR4 |
| Precursor location: | 328 - 538 (positive strand) |
| precursor length: | 211 (56 basepairs) |
| MIR position: | 192 - 211 (519 - 538) |
| MIR length: | 20 (17 paired bases) |
| miRNA location TIGR v3: | chr2:14363794>14364004 |
| miRNA location TIGR v5: | chr2:14422407>14422617 |
| Folding energy: | -39.97 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster021 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
UCUCCGUUUC ACAAUAUAAG UUGUUUUAGC UAAAAACACA CAUAUUAAGC AUAUUAACUU 60
:((((((((- (-(((((((( (((((-(((( ((((--(((( (,,,,,,,,, ,,,,,,,<<<
UUAAAAAGUU CAGCCAAUCA UAAAAGAGAC UGUAAAAUAU AAAUAAUCAU AAAGUAUUAA 120
<<<_______ __________ >>>>>>,,,, ,,,,,,,<<< <<<<------ -<<<<-----
AGUAAUAUAU AACUUGCAUA AAAACUUGAA AACAAUUUAU AGUGUGAAAC AAAAAAUUUG 180
-<<<<_____ ___>>>>--- --->>>>--- ---->>>>>> >)))))---- ------))))
********* ********** *
GUCUAUAACA ACUUAUAUUA UAAAACGGAG G 211
)-)))-)))) )))))))))- )-)))))))) :
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At3g55020.1 | 68410.m05644 expressed protein | 2 | 1 |
Rice homologs
- gnl|BL_ORD_ID|1301_3833+3952_101-120
- gnl|BL_ORD_ID|1301_3833-3952_1-20
- gnl|BL_ORD_ID|761_40562-40681_1-20
- gnl|BL_ORD_ID|761_40562+40681_101-120
- gnl|BL_ORD_ID|3084_54339-54571_1-20
- gnl|BL_ORD_ID|3084_54336-54571_1-20
- gnl|BL_ORD_ID|2480_88524+88676_134-153
- gnl|BL_ORD_ID|2480_88525-88676_1-20
- gnl|BL_ORD_ID|3598_152199-152326_1-20
- gnl|BL_ORD_ID|3598_152199+152326_109-128