| IGR sequence: | igr2356#chr3#x1=9872012#l=10062 |
|---|---|
| Mature miRNA sequence: | AGGCAAGUCAUCCUUGGCUAC |
| encoded miRNA: | MIR12 |
| Precursor location: | 7800 - 7947 (positive strand) |
| precursor length: | 148 (52 basepairs) |
| MIR position: | 128 - 148 (7927 - 7947) |
| MIR length: | 21 (17 paired bases) |
| miRNA location TIGR v3: | chr3:9879811>9879958 |
| miRNA location TIGR v5: | chr3:9879801>9879948 |
| Folding energy: | -47.20 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster008 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
UAGCCAAAGA GACUGCCUGA AACCUAACCC GCAAGAUUCA ACAUGAUAUU UGACCUAUUA 60
(((((((-(( (((((((((( ,,<<<---<< <<--<<<<<< <<<<<---<< <<---<<<<<
UACUUUAAAA GGUAUAAUAA UCCAAAAUGC AUGAAUUUGA AAUUGAAUCG UGGAGGCGAA 120
<<<<<____> >>>>>>>>>- -->>>>---> >>>------- -->>>>>>>> >>>>>><___
*** ********** ********
AAAGAUCAGG CAAGUCAUCC UUGGCUAC 148
___>,))))) )-))))-))- ))))))):
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g54150.1 | 68408.m05663 zinc finger (C3HC4-type RING finger) protein family | 2 | 8 |
Rice homologs
- gnl|BL_ORD_ID|2510_67223-67328_1-21
- gnl|BL_ORD_ID|2510_67223+67328_86-106
- gnl|BL_ORD_ID|2154_158030-158181_1-21
- gnl|BL_ORD_ID|2154_158031+158181_131-151
- gnl|BL_ORD_ID|323_84895+85045_131-151
- gnl|BL_ORD_ID|323_84894-85045_1-21