| IGR sequence: | igr1929#chr5#x1=8503345#l=5327 |
|---|---|
| Mature miRNA sequence: | UGCAGCCAAGGAUGACUUGCCG |
| encoded miRNA: | MIR81 |
| Precursor location: | 1912 - 2016 (positive strand) |
| precursor length: | 105 (39 basepairs) |
| MIR position: | 1 - 22 (1912 - 1933) |
| MIR length: | 22 (18 paired bases) |
| miRNA location TIGR v3: | chr5:8505256>8505360 |
| miRNA location TIGR v5: | chr5:8527512>8527616 |
| Folding energy: | -45.10 |
| BLAST hit against RFAM Atha miRNAs: | none |
| Belongs to miRNAs-targets cluster: | cluster006 |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** **
UGCAGCCAAG GAUGACUUGC CGGAACGUUG UUAACCAUGC AUAUGAAUAA UGUGAUGAUU 60
:(-((((((( ((--(((((( (((((---(( ((---(((-( ((((((-((( (______)))
AAUUAUGUGA UGAACAUAUU UCUGGCAAGU UGUCCUUCGG CUACA 105
)-)))))))) ))))))---) )))))))))) --)))))-)) ))-):
Postscript file CT file PNG file fasta file Stockholm file
Targets:
| Nr. | Gene | Description | mismatches | miRNAs |
|---|---|---|---|---|
| 1 | At1g17590.1 | 68408.m01959 transcription factor -related | 3 | 10 |
| 2 | At1g54160.1 | 68408.m05664 CCAAT-binding factor B subunit -related | 3 | 8 |
Rice homologs
- gnl|BL_ORD_ID|430_45596+45694_1-22