IGR sequence: | igr4835#chr1#x1=22526634#l=6090 |
---|---|
Mature miRNA sequence: | GAUAUUGGUGCGGUUCAAUCAGAAA |
encoded miRNA: | MIR49 |
Precursor location: | 3258 - 3336 (negative strand) |
precursor length: | 79 (32 basepairs) |
MIR position: | 1 - 25 (3312 - 3336) |
MIR length: | 25 (23 paired bases) |
miRNA location TIGR v3: | chr1:22529891<22529969 |
miRNA location TIGR v5: | chr1:22933763<22933841 |
Folding energy: | -44.60 |
BLAST hit against RFAM Atha miRNAs: | none |
Belongs to miRNAs-targets cluster: | none |
Sequence and secondary structure:
Presumed mature miRNA positions are indicated by *'s.
********** ********** ***** GAUAUUGGUG CGGUUCAAUC AGAAAACCGU ACUCUUUUGU UUUAAAGAUC GGUUUAUUUG 60 ((((((((-- (((((((((( (((((((((- --(((((___ ___)))))-) )))))-)))) AUUGAGCCGU GCCAAUAUC 79 )))))))))- -))))))))
Postscript file CT file PNG file fasta file Stockholm file
Targets:
No Targets found for this miRNA
Rice homologs
- gnl|BL_ORD_ID|2328_80672+80750_55-79
- gnl|BL_ORD_ID|2328_80672-80750_1-25
- gnl|BL_ORD_ID|2115_32377-32456_1-25
- gnl|BL_ORD_ID|2115_32377+32456_56-80
- gnl|BL_ORD_ID|1407_77000-77079_1-25
- gnl|BL_ORD_ID|1407_77000+77079_56-80