Functional clusters

Information

  • Type MapMan
  • Description Solute transport

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 1 CH_arhy_382 19 76 0.0000124357
Brassica oleracea C6 1 CH_bol_451 15 76 0.000990991
Corylus avellana 1 1 CH_cav_169 18 63 0.00000313017
Citrullus lanatus CG_Chr10 1 CH_cla_84 19 78 0.00000950839
Davidia involucrata GWHABJS00000019 1 CH_din_487 12 40 0.000713073
Erigeron canadensis Conyza_canadensis_scaffold:2 1 CH_eca_225 16 72 0.0000115425
Lupinus albus Lalb_Chr13 1 CH_lal_434 9 18 0.000983831
Magnolia biondii Chr01 1 CH_mbi_228 16 66 0.00000198659
Malus domestica Chr10 1 CH_mdo_365 13 38 0.0000278705
Manihot esculenta Chromosome02 1 CH_mes_390 18 79 0.000232535
Pisum sativum chr4LG4 1 CH_psa_246 14 53 0.0000744605
Quercus lobata 9 1 CH_qlo_988 16 64 0.000559494
Sequoiadendron giganteum chr9 1 CH_sgi_255 25 80 0.00000000000273848
Solanum pennellii Spenn-ch03 1 CH_spe_226 12 38 0.0000140624
Trochodendron aralioides group7 1 CH_tar_209 10 17 0.0000123109
Vitis vinifera chr19 1 CH_vvi_371 11 28 0.000389015
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 2 CH_arhy_382 19 76 0.0000124357
Brassica oleracea C6 2 CH_bol_451 15 76 0.000990991
Corylus avellana 1 2 CH_cav_169 18 63 0.00000313017
Citrullus lanatus CG_Chr10 2 CH_cla_84 19 78 0.00000950839
Davidia involucrata GWHABJS00000019 2 CH_din_487 12 40 0.000713073
Erigeron canadensis Conyza_canadensis_scaffold:2 2 CH_eca_225 16 72 0.0000115425
Lupinus albus Lalb_Chr13 2 CH_lal_434 9 18 0.000983831
Magnolia biondii Chr01 2 CH_mbi_228 16 66 0.00000198659
Malus domestica Chr10 2 CH_mdo_365 13 38 0.0000278705
Manihot esculenta Chromosome02 2 CH_mes_390 18 79 0.000232535
Pisum sativum chr4LG4 2 CH_psa_246 14 53 0.0000744605
Quercus lobata 9 2 CH_qlo_988 16 64 0.000559494
Sequoiadendron giganteum chr9 2 CH_sgi_255 25 80 0.00000000000273848
Solanum pennellii Spenn-ch03 2 CH_spe_226 12 38 0.0000140624
Trochodendron aralioides group7 2 CH_tar_209 10 17 0.0000123109
Vitis vinifera chr19 2 CH_vvi_371 11 28 0.000389015

Available child term results

Ontology identifier Description Number of clusters
24.1 Solute transport.primary active transport 12
24.1.1.1 Solute transport.primary active transport.V-type ATPase complex.membrane V0 subcomplex 8
24.1.1.1.1 Solute transport.primary active transport.V-type ATPase complex.membrane V0 subcomplex.subunit a 12
24.1.1.1.2 Solute transport.primary active transport.V-type ATPase complex.membrane V0 subcomplex.subunit c 12
24.1.1.1.3 Solute transport.primary active transport.V-type ATPase complex.membrane V0 subcomplex.subunit d 27
24.1.1.1.4 Solute transport.primary active transport.V-type ATPase complex.membrane V0 subcomplex.subunit e 2
24.1.1.2.1 Solute transport.primary active transport.V-type ATPase complex.peripheral V1 subcomplex.subunit A 6
24.1.1.2.2 Solute transport.primary active transport.V-type ATPase complex.peripheral V1 subcomplex.subunit B 6
24.1.1.2.3 Solute transport.primary active transport.V-type ATPase complex.peripheral V1 subcomplex.subunit C 7
24.1.1.2.4 Solute transport.primary active transport.V-type ATPase complex.peripheral V1 subcomplex.subunit D 4
24.1.1.2.5 Solute transport.primary active transport.V-type ATPase complex.peripheral V1 subcomplex.subunit E 8
24.1.1.2.6 Solute transport.primary active transport.V-type ATPase complex.peripheral V1 subcomplex.subunit F 6
24.1.1.2.7 Solute transport.primary active transport.V-type ATPase complex.peripheral V1 subcomplex.subunit G 4
24.1.1.2.8 Solute transport.primary active transport.V-type ATPase complex.peripheral V1 subcomplex.subunit H 38
24.1.1.3 Solute transport.primary active transport.V-type ATPase complex.assembly factor (VMA21) 2
24.1.2 Solute transport.primary active transport.P-type ATPase superfamily 10
24.1.2.1.1 Solute transport.primary active transport.P-type ATPase superfamily.P1 family.P1B-type heavy metal cation-transporting ATPase (HMA) 47
24.1.2.2.1 Solute transport.primary active transport.P-type ATPase superfamily.P2 family.P2A-type calcium cation-transporting ATPase (ECA) 16
24.1.2.2.2 Solute transport.primary active transport.P-type ATPase superfamily.P2 family.P2B-type calcium cation-transporting ATPase (ACA) 84
24.1.2.3.1 Solute transport.primary active transport.P-type ATPase superfamily.P3 family.P3A-type proton-translocating ATPase (AHA) 12
24.1.2.4.1.1 Solute transport.primary active transport.P-type ATPase superfamily.P4 family.phospholipid flippase complex.P4-type ATPase component ALA 22
24.1.2.4.1.2 Solute transport.primary active transport.P-type ATPase superfamily.P4 family.phospholipid flippase complex.regulatory component ALIS 3
24.1.2.5.1 Solute transport.primary active transport.P-type ATPase superfamily.P5 family.P5-type cation-transporting ATPase (MIA) 14
24.1.3 Solute transport.primary active transport.ABC superfamily 13
24.1.3.1.1 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter 114
24.1.3.1.2 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCC transporter 175
24.1.3.1.3 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter 12
24.1.3.2 Solute transport.primary active transport.ABC superfamily.ABC2 family 2
24.1.3.2.1 Solute transport.primary active transport.ABC superfamily.ABC2 family.subfamily ABCA transporter 184
24.1.3.2.2 Solute transport.primary active transport.ABC superfamily.ABC2 family.subfamily ABCG transporter 307
24.1.4.1 Solute transport.primary active transport.VHP PPase family.proton-translocating pyrophosphatase (VHP1) 2
24.1.4.2 Solute transport.primary active transport.VHP PPase family.proton-translocating pyrophosphatase (VHP2) 4
24.2 Solute transport.carrier-mediated transport 26
24.2.1 Solute transport.carrier-mediated transport.DMT superfamily 6
24.2.1.1 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group 4
24.2.1.1.1 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.phosphometabolite transporter (TPT/PPT/GPT/XPT) 8
24.2.1.1.11 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.nucleotide sugar transporter (UUAT) 2
24.2.1.1.3 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.nucleotide sugar transporter (URGT/UXT) 4
24.2.1.1.4 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.nucleotide sugar transporter (GONST1/2/3/4) 9
24.2.1.1.5 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.nucleotide sugar transporter (UTR1/5) 8
24.2.1.1.7 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.nucleotide sugar transporter (CSTLP) 2
24.2.1.1.8 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.nucleotide sugar transporter (UTR7) 6
24.2.1.1.9 Solute transport.carrier-mediated transport.DMT superfamily.NST-TPT group.nucleotide sugar transporter (ROCK) 6
24.2.1.2 Solute transport.carrier-mediated transport.DMT superfamily.nucleobase cation transporter (UPS) 97
24.2.1.3 Solute transport.carrier-mediated transport.DMT superfamily.glutathione transporter (CLT) 18
24.2.1.5 Solute transport.carrier-mediated transport.DMT superfamily.solute transporter (UmamiT) 581
24.2.1.6 Solute transport.carrier-mediated transport.DMT superfamily.organic cation transporter (PUP) 192
24.2.1.7 Solute transport.carrier-mediated transport.DMT superfamily.solute transporter (TPPT) 37
24.2.10 Solute transport.carrier-mediated transport.OPT family 28
24.2.10.1 Solute transport.carrier-mediated transport.OPT family.iron chelator transporter (YSL) 30
24.2.10.2 Solute transport.carrier-mediated transport.OPT family.oligopeptide transporter (OPT) 124
24.2.11.1 Solute transport.carrier-mediated transport.ZIP family.metal cation transporter (ZIP) 112
24.2.11.2 Solute transport.carrier-mediated transport.ZIP family.metal cation transporter (ZIP13) 2
24.2.11.3 Solute transport.carrier-mediated transport.ZIP family.metal cation transporter (IAR) 16
24.2.11.4 Solute transport.carrier-mediated transport.ZIP family.metal cation transporter (ZTP) 2
24.2.12.1 Solute transport.carrier-mediated transport.VIT family.metal cation transporter (VIT) 2
24.2.12.2 Solute transport.carrier-mediated transport.VIT family.metal cation transporter (MEB) 73
24.2.12.3 Solute transport.carrier-mediated transport.VIT family.iron cation transporter (VTL) 82
24.2.13 Solute transport.carrier-mediated transport.solute transporter (MTCC) 61
24.2.15 Solute transport.carrier-mediated transport.anion channel / anion:proton antiporter (CLC) 8
24.2.16 Solute transport.carrier-mediated transport.nucleoside transporter (ENT) 29
24.2.17 Solute transport.carrier-mediated transport.phosphate transporter (PHT2) 20
24.2.19 Solute transport.carrier-mediated transport.potassium/sodium cation transporter (HKT) 93
24.2.2 Solute transport.carrier-mediated transport.MFS superfamily 41
24.2.2.1 Solute transport.carrier-mediated transport.MFS superfamily.SP family 4
24.2.2.1.2 Solute transport.carrier-mediated transport.MFS superfamily.SP family.hexose transporter (VGT) 12
24.2.2.1.3 Solute transport.carrier-mediated transport.MFS superfamily.SP family.inositol transporter (INT) 51
24.2.2.1.4 Solute transport.carrier-mediated transport.MFS superfamily.SP family.monosaccharide transporter (AZT) 25
24.2.2.1.5 Solute transport.carrier-mediated transport.MFS superfamily.SP family.monosaccharide transporter (ERD6) 175
24.2.2.1.6 Solute transport.carrier-mediated transport.MFS superfamily.SP family.monosaccharide transporter (STP) 165
24.2.2.1.7 Solute transport.carrier-mediated transport.MFS superfamily.SP family.polyol/monosaccharide transporter (PLT) 99
24.2.2.10 Solute transport.carrier-mediated transport.MFS superfamily.nitrate transporter (NRT2) 109
24.2.2.11 Solute transport.carrier-mediated transport.MFS superfamily.N-acetylglucosamine transporter (NGT) 32
24.2.2.12 Solute transport.carrier-mediated transport.MFS superfamily.organic anion transporter (OATP) 26
24.2.2.13 Solute transport.carrier-mediated transport.MFS superfamily.iron-regulated metal cation transporter (FPN) 10
24.2.2.14 Solute transport.carrier-mediated transport.MFS superfamily.ATP:ADP antiporter (NTT) 12
24.2.2.15 Solute transport.carrier-mediated transport.MFS superfamily.molybdate anion transporter (MOT2) 7
24.2.2.16 Solute transport.carrier-mediated transport.MFS superfamily.anion transporter (Fabaceae-N70) 137
24.2.2.17 Solute transport.carrier-mediated transport.MFS superfamily.solute transporter (UNE2) 98
24.2.2.2.1 Solute transport.carrier-mediated transport.MFS superfamily.DHA-1 family.metal chelator transporter (ZIF/TOM) 106
24.2.2.2.2 Solute transport.carrier-mediated transport.MFS superfamily.DHA-1 family.metal chelator transporter (TCR) 54
24.2.2.2.3 Solute transport.carrier-mediated transport.MFS superfamily.DHA-1 family.phosphate transporter (PHT5) 26
24.2.2.3.1 Solute transport.carrier-mediated transport.MFS superfamily.OCT family.nicotinate transporter (NiaP) 32
24.2.2.3.2 Solute transport.carrier-mediated transport.MFS superfamily.OCT family.organic cation transporter (OCT) 88
24.2.2.4 Solute transport.carrier-mediated transport.MFS superfamily.sugar transporter (SUT/SUC) 69
24.2.2.5 Solute transport.carrier-mediated transport.MFS superfamily.small solute transporter (BT1) 25
24.2.2.6 Solute transport.carrier-mediated transport.MFS superfamily.phosphate transporter (PHT1) 167
24.2.2.7 Solute transport.carrier-mediated transport.MFS superfamily.phosphate transporter (PHT4) 18
24.2.2.8 Solute transport.carrier-mediated transport.MFS superfamily.organic phosphate/glycerol-3-phosphate permease (G3P) 23
24.2.2.9 Solute transport.carrier-mediated transport.MFS superfamily.anion transporter (NRT1/PTR) 669
24.2.20 Solute transport.carrier-mediated transport.manganese/calcium cation transporter (BICAT) 10
24.2.21 Solute transport.carrier-mediated transport.fatty acid transporter (FAX) 8
24.2.25 Solute transport.carrier-mediated transport.choline transporter (CHER/CTL1) 22
24.2.3 Solute transport.carrier-mediated transport.APC superfamily 14
24.2.3.1 Solute transport.carrier-mediated transport.APC superfamily.SulP family 10
24.2.3.1.1 Solute transport.carrier-mediated transport.APC superfamily.SulP family.sulfate transporter (SULTR) 65
24.2.3.1.2 Solute transport.carrier-mediated transport.APC superfamily.SulP family.molybdate transporter (MOT) 32
24.2.3.10 Solute transport.carrier-mediated transport.APC superfamily.metal cation transporter (NRAMP) 44
24.2.3.11 Solute transport.carrier-mediated transport.APC superfamily.potassium cation transporter (HAK/KUP/KT) 72
24.2.3.2.1 Solute transport.carrier-mediated transport.APC superfamily.NCS-1 family.nucleobase cation transporter (PLUTO) 12
24.2.3.3.1 Solute transport.carrier-mediated transport.APC superfamily.NCS-2 family.purine transporter (AZG) 16
24.2.3.3.2 Solute transport.carrier-mediated transport.APC superfamily.NCS-2 family.solute transporter (NAT) 16
24.2.3.4 Solute transport.carrier-mediated transport.APC superfamily.AAAP family 6
24.2.3.4.1 Solute transport.carrier-mediated transport.APC superfamily.AAAP family.amino acid transporter (AAP) 136
24.2.3.4.2 Solute transport.carrier-mediated transport.APC superfamily.AAAP family.amino acid transporter (LHT) 76
24.2.3.4.3 Solute transport.carrier-mediated transport.APC superfamily.AAAP family.proline transporter (ProT) 50
24.2.3.4.4 Solute transport.carrier-mediated transport.APC superfamily.AAAP family.amino acid transporter (ANT) 17
24.2.3.4.5 Solute transport.carrier-mediated transport.APC superfamily.AAAP family.auxin transporter (AUX/LAX) 10
24.2.3.4.6 Solute transport.carrier-mediated transport.APC superfamily.AAAP family.gamma-aminobutyric acid transporter (GAT) 52
24.2.3.4.7 Solute transport.carrier-mediated transport.APC superfamily.AAAP family.solute transporter (AAAP) 68
24.2.3.5.1 Solute transport.carrier-mediated transport.APC superfamily.APC family.amino acid transporter (LAT) 80
24.2.3.5.2 Solute transport.carrier-mediated transport.APC superfamily.APC family.cationic amino acid transporter (CAT) 42
24.2.3.5.3 Solute transport.carrier-mediated transport.APC superfamily.APC family.gamma-aminobutyric acid transporter (GABP) 43
24.2.3.6 Solute transport.carrier-mediated transport.APC superfamily.borate transporter (BOR) 24
24.2.3.7 Solute transport.carrier-mediated transport.APC superfamily.proton:urea symporter (DUR) 13
24.2.3.8 Solute transport.carrier-mediated transport.APC superfamily.aromatic amino acid transporter (HAAAP) 18
24.2.3.9 Solute transport.carrier-mediated transport.APC superfamily.cation:chloride co-transporter (CCC) 16
24.2.4.1 Solute transport.carrier-mediated transport.MOP superfamily.MATE family 2
24.2.4.1.1 Solute transport.carrier-mediated transport.MOP superfamily.MATE family.metabolite transporter (DTX) 599
24.2.4.1.2 Solute transport.carrier-mediated transport.MOP superfamily.MATE family.metabolite transporter (EDS5) 76
24.2.4.1.3 Solute transport.carrier-mediated transport.MOP superfamily.MATE family.metal-citrate complex transporter (FRD) 12
24.2.5.1.1 Solute transport.carrier-mediated transport.BART superfamily.BASS family.2-keto acid transporter (BAT) 24
24.2.5.1.2 Solute transport.carrier-mediated transport.BART superfamily.BASS family.small solute transporter (BASS) 10
24.2.5.2.2 Solute transport.carrier-mediated transport.BART superfamily.AEC family.auxin transporter (PILS) 87
24.2.6.1 Solute transport.carrier-mediated transport.TOC superfamily.sugar efflux transporter (SWEET) 187
24.2.6.2 Solute transport.carrier-mediated transport.TOC superfamily.transport protein (TSUP) 54
24.2.6.3 Solute transport.carrier-mediated transport.TOC superfamily.transport protein (NiCoT) 8
24.2.7.1.1 Solute transport.carrier-mediated transport.IT superfamily.DASS family.di-/tricarboxylate transporter (TDT) 16
24.2.7.1.2 Solute transport.carrier-mediated transport.IT superfamily.DASS family.dicarboxylate:malate antiporter (DIT) 50
24.2.7.2 Solute transport.carrier-mediated transport.IT superfamily.putative silicon efflux transporter (LSI2) 66
24.2.7.3 Solute transport.carrier-mediated transport.IT superfamily.proton:sodium cation antiporter (NHD) 10
24.2.7.4 Solute transport.carrier-mediated transport.IT superfamily.phosphate transporter (PHO) 105
24.2.8.1.1 Solute transport.carrier-mediated transport.CPA superfamily.CPA-1 family.proton:cation antiporter (NHX) 10
24.2.8.1.2 Solute transport.carrier-mediated transport.CPA superfamily.CPA-1 family.proton:lithium/sodium cation antiporter (SOS1) 13
24.2.8.2.1 Solute transport.carrier-mediated transport.CPA superfamily.CPA-2 family.proton:monovalent cation antiporter (CHX) 202
24.2.8.2.2 Solute transport.carrier-mediated transport.CPA superfamily.CPA-2 family.proton:potassium cation antiporter (KEA) 5
24.2.9 Solute transport.carrier-mediated transport.CDF superfamily 2
24.2.9.1.1 Solute transport.carrier-mediated transport.CDF superfamily.CaCA family.cation antiporter (CAX) 26
24.2.9.1.2 Solute transport.carrier-mediated transport.CDF superfamily.CaCA family.cation:calcium cation exchanger (CCX) 57
24.2.9.1.3 Solute transport.carrier-mediated transport.CDF superfamily.CaCA family.magnesium cation:proton antiporter (MHX) 7
24.2.9.1.4 Solute transport.carrier-mediated transport.CDF superfamily.CaCA family.cation exchanger (NCL/EF-CAX) 135
24.2.9.1.5 Solute transport.carrier-mediated transport.CDF superfamily.CaCA family.potassium-dependent sodium:calcium exchanger (NCKX) 2
24.2.9.2 Solute transport.carrier-mediated transport.CDF superfamily.CDF family 2
24.2.9.2.1 Solute transport.carrier-mediated transport.CDF superfamily.CDF family.iron/zinc cation transporter (Fe/Zn-CDF) 12
24.2.9.2.2 Solute transport.carrier-mediated transport.CDF superfamily.CDF family.manganese cation transporter (Mn-CDF) 51
24.2.9.2.3 Solute transport.carrier-mediated transport.CDF superfamily.CDF family.zinc cation transporter (Zn-CDF) 6
24.2.9.2.4 Solute transport.carrier-mediated transport.CDF superfamily.CDF family.metal cation transporter 14
24.3.1.1 Solute transport.channels.MIP family.Nodulin-26-like intrinsic protein (NIP) 45
24.3.1.2 Solute transport.channels.MIP family.plasma membrane intrinsic protein (PIP) 54
24.3.1.3 Solute transport.channels.MIP family.tonoplast intrinsic protein (TIP) 26
24.3.1.4 Solute transport.channels.MIP family.small basic intrinsic protein (SIP) 18
24.3.1.5 Solute transport.channels.MIP family.X-intrinsic protein (XIP) 72
24.3.10 Solute transport.channels.anion channel (SLAC) 40
24.3.11 Solute transport.channels.anion channel (QUAC/ALMT) 95
24.3.13 Solute transport.channels.magnesium cation transporter (MMgT) 2
24.3.14 Solute transport.channels.calcium-dependent anion channel (Ca-ClC) 4
24.3.15.1 Solute transport.channels.MCU calcium uniporter complex.channel component MCU 17
24.3.15.2 Solute transport.channels.MCU calcium uniporter complex.regulator component MICU 18
24.3.16 Solute transport.channels.fluoride anion export channel (FEX) 45
24.3.17 Solute transport.channels.mechanosensitive ion channel (Piezo) 16
24.3.2 Solute transport.channels.VIC superfamily 2
24.3.2.1 Solute transport.channels.VIC superfamily.voltage-gated calcium cation channel (TPC) 26
24.3.2.2 Solute transport.channels.VIC superfamily.voltage-gated potassium cation channel (AKT/SKOR/GORK) 26
24.3.2.3 Solute transport.channels.VIC superfamily.voltage-gated potassium cation channel (TPK/KCO) 32
24.3.2.4 Solute transport.channels.VIC superfamily.cyclic nucleotide-gated cation channel (CNGC) 135
24.3.2.5 Solute transport.channels.VIC superfamily.cation channel (DMI1) 10
24.3.3.1 Solute transport.channels.CorA family.metal cation transporter (MRS/MGT) 47
24.3.3.2 Solute transport.channels.CorA family.metal cation transporter (CorA) 27
24.3.4.1 Solute transport.channels.AMT family.ammonium transporter (AMT1) 40
24.3.4.2 Solute transport.channels.AMT family.ammonium transporter (AMT2/3) 30
24.3.5 Solute transport.channels.mechanosensitive ion channel (MSL) 67
24.3.6 Solute transport.channels.mechanosensitive cation channel (MCA) 8
24.3.7 Solute transport.channels.calcium-permeable channel (OSCA) 8
24.3.8 Solute transport.channels.chloride anion channel (VCCN) 8
24.3.9 Solute transport.channels.ligand-gated cation channel (GLR) 452
24.4.1 Solute transport.porins.voltage-gated anion channel (VDAC) 8
24.4.2 Solute transport.porins.outer membrane porin (OEP21) 8
24.4.3 Solute transport.porins.outer membrane porin (OEP23) 6
24.4.4 Solute transport.porins.outer membrane porin (OEP24) 8
24.4.5 Solute transport.porins.outer membrane porin (OEP37) 12
24.4.6 Solute transport.porins.outer membrane porin (OEP40) 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001