Functional clusters
Information
- Type MapMan
- Description Solute transport.primary active transport.P-type ATPase superfamily.P1 family.P1B-type heavy metal cation-transporting ATPase (HMA)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrC09 | 1 | CH_bca_131 | 4 | 5 | 0.00000000155669 |
| Brassica napus | C01 | 1 | CH_bna_372 | 3 | 4 | 0.000011264 |
| Camellia sinensis var. sinensis | Chr14 | 1 | CH_camsi_418 | 3 | 5 | 0.00000520252 |
| Capsicum annuum | PGAv.1.6.scaffold774 | 1 | CH_can_401 | 2 | 2 | 0.000495663 |
| Corylus avellana | 4 | 1 | CH_cav_150 | 3 | 3 | 0.00000145491 |
| Citrus clementina | scaffold_5 | 1 | CH_ccl_350 | 3 | 8 | 0.000124161 |
| Carpinus fangiana | Cfa05 | 1 | CH_cfa_159 | 3 | 4 | 0.00000567709 |
| Carya illinoinensis | Chr11 | 1 | CH_cil_273 | 3 | 3 | 0.00000262216 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3489 | 1 | CH_cqu_279 | 3 | 4 | 0.0000153516 |
| Daucus carota | DCARv2_Chr1 | 1 | CH_dca_210 | 3 | 8 | 0.0000409616 |
| Davidia involucrata | GWHABJS00000001 | 1 | CH_din_31 | 5 | 6 | 0.000000000000222968 |
| Gossypium hirsutum | A08 | 1 | CH_ghi_372 | 3 | 4 | 0.00000414456 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 1 | CH_lsa_228 | 3 | 3 | 0.00000113346 |
| Magnolia biondii | Chr17 | 1 | CH_mbi_298 | 3 | 7 | 0.0000272227 |
| Malus domestica | Chr01 | 1 | CH_mdo_223 | 4 | 10 | 0.000000205283 |
| Petunia axillaris | Peaxi162Scf00119 | 1 | CH_pax_44 | 4 | 5 | 0.000000000658155 |
| Physcomitrium patens | Chr01 | 1 | CH_ppa_2 | 8 | 11 | 1.27329e-20 |
| Quercus lobata | 11 | 1 | CH_qlo_493 | 3 | 3 | 0.000000879652 |
| Quercus lobata | 11 | 1 | CH_qlo_568 | 3 | 5 | 0.000008793 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 1 | CH_rch_430 | 4 | 43 | 0.0000166655 |
| Rhododendron simsii | chr02 | 1 | CH_rsi_68 | 5 | 6 | 0.000000000000618004 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_618 | 3 | 3 | 0.00000199351 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_662 | 3 | 4 | 0.00000797194 |
| Solanum tuberosum | ST4.03ch08 | 1 | CH_stu_511 | 2 | 2 | 0.000307472 |
| Brassica carinata | ChrC09 | 2 | CH_bca_131 | 4 | 5 | 0.00000000155669 |
| Camellia sinensis var. sinensis | Chr14 | 2 | CH_camsi_418 | 3 | 5 | 0.00000520252 |
| Capsicum annuum | PGAv.1.6.scaffold774 | 2 | CH_can_401 | 2 | 2 | 0.000495663 |
| Corylus avellana | 4 | 2 | CH_cav_150 | 3 | 3 | 0.00000145491 |
| Citrus clementina | scaffold_5 | 2 | CH_ccl_350 | 3 | 8 | 0.000124161 |
| Carpinus fangiana | Cfa05 | 2 | CH_cfa_159 | 3 | 4 | 0.00000567709 |
| Carya illinoinensis | Chr11 | 2 | CH_cil_273 | 3 | 3 | 0.00000262216 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3489 | 2 | CH_cqu_279 | 3 | 4 | 0.0000153516 |
| Daucus carota | DCARv2_Chr1 | 2 | CH_dca_210 | 3 | 8 | 0.0000409616 |
| Davidia involucrata | GWHABJS00000001 | 2 | CH_din_31 | 5 | 6 | 0.000000000000222968 |
| Gossypium hirsutum | A08 | 2 | CH_ghi_372 | 3 | 4 | 0.00000414456 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 2 | CH_lsa_228 | 3 | 3 | 0.00000113346 |
| Magnolia biondii | Chr17 | 2 | CH_mbi_298 | 3 | 7 | 0.0000272227 |
| Malus domestica | Chr01 | 2 | CH_mdo_223 | 4 | 10 | 0.000000205283 |
| Petunia axillaris | Peaxi162Scf00119 | 2 | CH_pax_44 | 4 | 5 | 0.000000000658155 |
| Physcomitrium patens | Chr01 | 2 | CH_ppa_2 | 8 | 11 | 1.27329e-20 |
| Quercus lobata | 11 | 2 | CH_qlo_493 | 3 | 3 | 0.000000879652 |
| Quercus lobata | 11 | 2 | CH_qlo_568 | 3 | 5 | 0.000008793 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 2 | CH_rch_430 | 4 | 43 | 0.0000166655 |
| Rhododendron simsii | chr02 | 2 | CH_rsi_68 | 5 | 6 | 0.000000000000618004 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_618 | 3 | 3 | 0.00000199351 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_662 | 3 | 4 | 0.00000797194 |
| Solanum tuberosum | ST4.03ch08 | 2 | CH_stu_511 | 2 | 2 | 0.000307472 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |