Functional clusters
Information
- Type MapMan
- Description Solute transport.channels.MIP family.Nodulin-26-like intrinsic protein (NIP)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aquilegia oxysepala | CHR04 | 1 | CH_aox_100 | 3 | 4 | 0.00000324107 |
| Brassica carinata | ChrB02 | 1 | CH_bca_321 | 4 | 12 | 0.000000455548 |
| Brassica napus | A04 | 1 | CH_bna_302 | 3 | 3 | 0.00000232051 |
| Camellia sinensis var. sinensis | Chr8 | 1 | CH_camsi_984 | 2 | 2 | 0.000962949 |
| Cannabis sativa | NC_044379.1 | 1 | CH_cansat_47 | 5 | 6 | 0.00000000000167477 |
| Cicer arietinum L. | Ca_LG1_v3 | 1 | CH_car_90 | 4 | 17 | 0.00000335465 |
| Corylus avellana | 2 | 1 | CH_cav_132 | 3 | 3 | 0.000000493788 |
| Carpinus fangiana | Cfa01 | 1 | CH_cfa_131 | 3 | 3 | 0.00000072273 |
| Carya illinoinensis | Chr11 | 1 | CH_cil_299 | 3 | 4 | 0.0000083885 |
| Carya illinoinensis | Chr10 | 1 | CH_cil_378 | 3 | 8 | 0.000117304 |
| Durio zibethinus | NW_019168470.1 | 1 | CH_dzi_7 | 8 | 15 | 1.17163e-19 |
| Eutrema salsugineum | scaffold_14 | 1 | CH_esa_105 | 3 | 3 | 0.000000730677 |
| Fragaria x ananassa | Fvb3-4 | 1 | CH_fan_259 | 3 | 3 | 0.00000507417 |
| Fragaria x ananassa | Fvb6-1 | 1 | CH_fan_59 | 5 | 11 | 0.000000000266844 |
| Fragaria vesca | Fvb6 | 1 | CH_fve_144 | 4 | 10 | 0.000000128734 |
| Helianthus annuus | HanXRQChr15 | 1 | CH_han_219 | 4 | 7 | 0.0000000643227 |
| Lotus japonicus | chr6 | 1 | CH_lja_47 | 5 | 6 | 0.00000000000727943 |
| Medicago truncatula | chr2 | 1 | CH_mtr_118 | 5 | 6 | 0.000000000000793428 |
| Pisum sativum | chr7LG7 | 1 | CH_psa_171 | 3 | 4 | 0.00000914033 |
| Sechium edule | LG01 | 1 | CH_sed_127 | 3 | 3 | 0.00000277906 |
| Sequoiadendron giganteum | chr8 | 1 | CH_sgi_979 | 3 | 12 | 0.0000657064 |
| Trochodendron aralioides | group13 | 1 | CH_tar_63 | 4 | 4 | 0.00000000088622 |
| Aquilegia oxysepala | CHR04 | 2 | CH_aox_100 | 3 | 4 | 0.00000324107 |
| Brassica carinata | ChrB02 | 2 | CH_bca_321 | 4 | 12 | 0.000000455548 |
| Camellia sinensis var. sinensis | Chr8 | 2 | CH_camsi_984 | 2 | 2 | 0.000962949 |
| Cannabis sativa | NC_044379.1 | 2 | CH_cansat_47 | 5 | 6 | 0.00000000000167477 |
| Cicer arietinum L. | Ca_LG1_v3 | 2 | CH_car_90 | 4 | 17 | 0.00000335465 |
| Corylus avellana | 2 | 2 | CH_cav_132 | 3 | 3 | 0.000000493788 |
| Carpinus fangiana | Cfa01 | 2 | CH_cfa_131 | 3 | 3 | 0.00000072273 |
| Carya illinoinensis | Chr11 | 2 | CH_cil_299 | 3 | 4 | 0.0000083885 |
| Carya illinoinensis | Chr10 | 2 | CH_cil_378 | 3 | 8 | 0.000117304 |
| Durio zibethinus | NW_019168470.1 | 2 | CH_dzi_7 | 8 | 15 | 1.17163e-19 |
| Eucalyptus grandis | Chr05 | 2 | CH_egr_313 | 4 | 4 | 0.00000000143158 |
| Eucalyptus grandis | Chr04 | 2 | CH_egr_554 | 3 | 3 | 0.00000349407 |
| Eutrema salsugineum | scaffold_14 | 2 | CH_esa_105 | 3 | 3 | 0.000000730677 |
| Fragaria x ananassa | Fvb3-4 | 2 | CH_fan_259 | 3 | 3 | 0.00000507417 |
| Fragaria x ananassa | Fvb6-1 | 2 | CH_fan_59 | 5 | 11 | 0.000000000266844 |
| Fragaria vesca | Fvb6 | 2 | CH_fve_144 | 4 | 10 | 0.000000128734 |
| Helianthus annuus | HanXRQChr15 | 2 | CH_han_219 | 4 | 7 | 0.0000000643227 |
| Lotus japonicus | chr4 | 2 | CH_lja_205 | 3 | 3 | 0.00000521581 |
| Lotus japonicus | chr6 | 2 | CH_lja_47 | 5 | 6 | 0.00000000000727943 |
| Pisum sativum | chr7LG7 | 2 | CH_psa_171 | 3 | 4 | 0.00000914033 |
| Sechium edule | LG01 | 2 | CH_sed_127 | 3 | 3 | 0.00000277906 |
| Sequoiadendron giganteum | chr8 | 2 | CH_sgi_979 | 3 | 12 | 0.0000657064 |
| Trochodendron aralioides | group13 | 2 | CH_tar_63 | 4 | 4 | 0.00000000088622 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |