Functional clusters
Information
- Type MapMan
- Description Solute transport.channels.VIC superfamily.voltage-gated potassium cation channel (TPK/KCO)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-9 | 1 | CH_aar_274 | 2 | 2 | 0.000912326 |
| Arabidopsis lyrata | scaffold_8 | 1 | CH_aly_456 | 2 | 2 | 0.000990066 |
| Amborella trichopoda | AmTr_v1.0_scaffold00011 | 1 | CH_atr_305 | 2 | 2 | 0.000476644 |
| Brassica rapa | A08 | 1 | CH_bra_172 | 3 | 7 | 0.0000159566 |
| Carpinus fangiana | Cfa08 | 1 | CH_cfa_117 | 3 | 3 | 0.000000301137 |
| Cardamine hirsuta | Chr6 | 1 | CH_chi_138 | 3 | 3 | 0.000000401335 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2080 | 1 | CH_cqu_48 | 7 | 30 | 0.0000000000000574205 |
| Eucalyptus grandis | Chr04 | 1 | CH_egr_213 | 7 | 55 | 0.00000000000106903 |
| Fragaria x ananassa | Fvb3-1 | 1 | CH_fan_118 | 4 | 9 | 0.0000000419914 |
| Gossypium hirsutum | A01 | 1 | CH_ghi_336 | 3 | 3 | 0.00000164699 |
| Gossypium hirsutum | D01 | 1 | CH_ghi_337 | 3 | 3 | 0.00000164699 |
| Gossypium raimondii | Chr02 | 1 | CH_gra_164 | 3 | 3 | 0.000000517353 |
| Lupinus albus | Lalb_Chr25 | 1 | CH_lal_36 | 5 | 12 | 0.0000000000208005 |
| Quercus lobata | 8 | 1 | CH_qlo_81 | 6 | 7 | 1.21346e-17 |
| Theobroma cacao | Chromosome_7 | 1 | CH_tca_77 | 4 | 4 | 0.0000000000825063 |
| Vitis vinifera | chr19 | 1 | CH_vvi_188 | 3 | 3 | 0.00000072901 |
| Aethionema arabicum | LG-9 | 2 | CH_aar_274 | 2 | 2 | 0.000912326 |
| Arabidopsis lyrata | scaffold_8 | 2 | CH_aly_456 | 2 | 2 | 0.000990066 |
| Amborella trichopoda | AmTr_v1.0_scaffold00011 | 2 | CH_atr_305 | 2 | 2 | 0.000476644 |
| Brassica rapa | A08 | 2 | CH_bra_172 | 3 | 7 | 0.0000159566 |
| Carpinus fangiana | Cfa08 | 2 | CH_cfa_117 | 3 | 3 | 0.000000301137 |
| Cardamine hirsuta | Chr6 | 2 | CH_chi_138 | 3 | 3 | 0.000000401335 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2080 | 2 | CH_cqu_48 | 7 | 30 | 0.0000000000000574205 |
| Eucalyptus grandis | Chr04 | 2 | CH_egr_213 | 7 | 55 | 0.00000000000106903 |
| Fragaria x ananassa | Fvb3-1 | 2 | CH_fan_118 | 4 | 9 | 0.0000000419914 |
| Gossypium hirsutum | A01 | 2 | CH_ghi_336 | 3 | 3 | 0.00000164699 |
| Gossypium hirsutum | D01 | 2 | CH_ghi_337 | 3 | 3 | 0.00000164699 |
| Gossypium raimondii | Chr02 | 2 | CH_gra_164 | 3 | 3 | 0.000000517353 |
| Lupinus albus | Lalb_Chr25 | 2 | CH_lal_36 | 5 | 12 | 0.0000000000208005 |
| Quercus lobata | 8 | 2 | CH_qlo_81 | 6 | 7 | 1.21346e-17 |
| Theobroma cacao | Chromosome_7 | 2 | CH_tca_77 | 4 | 4 | 0.0000000000825063 |
| Vitis vinifera | chr19 | 2 | CH_vvi_188 | 3 | 3 | 0.00000072901 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |