Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.MFS superfamily.SP family.monosaccharide transporter (STP)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-11 1 CH_aar_255 3 13 0.000782823
Acer truncatum chr7 1 CH_acertr_166 3 3 0.00000062622
Actinidia chinensis Lachesis_group3 1 CH_ach_76 4 24 0.0000245738
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 1 CH_arhy_255 4 7 0.000000314938
Brassica carinata ChrC09 1 CH_bca_439 3 3 0.00000578233
Brassica carinata ChrB04 1 CH_bca_440 3 3 0.00000578233
Brassica napus C01 1 CH_bna_34 6 9 0.0000000000000844607
Brassica napus A01 1 CH_bna_95 5 10 0.000000000580754
Brassica oleracea C1 1 CH_bol_60 4 4 0.0000000018387
Brassica rapa A01 1 CH_bra_51 5 9 0.000000000258762
Camellia sinensis var. sinensis Chr1 1 CH_camsi_207 6 41 0.000000011972
Camellia sinensis var. sinensis Chr6 1 CH_camsi_424 4 13 0.00000564268
Cannabis sativa NC_044377.1 1 CH_cansat_176 3 4 0.000017586
Coffea canephora chr2 1 CH_ccan_51 4 15 0.000000000431702
Citrus clementina scaffold_9 1 CH_ccl_345 3 4 0.0000927987
Citrus clementina scaffold_9 1 CH_ccl_8 13 17 1.74814e-33
Carya illinoinensis Chr10 1 CH_cil_292 3 3 0.0000065698
Cucumis melo chr06 1 CH_cme_61 4 4 0.00000000272572
Capsella rubella scaffold_6 1 CH_cru_233 3 5 0.0000364602
Cucumis sativus L. chr3 1 CH_csa_76 4 4 0.00000000676462
Davidia involucrata GWHABJS00000016 1 CH_din_196 3 4 0.00000682688
Erythranthe guttata scaffold_7 1 CH_egut_165 4 5 0.00000013745
Erythranthe guttata scaffold_6 1 CH_egut_255 3 3 0.0000290612
Erythranthe guttata scaffold_12 1 CH_egut_256 3 3 0.0000290612
Erythranthe guttata scaffold_12 1 CH_egut_63 8 49 0.00000000000642565
Fragaria x ananassa Fvb4-1 1 CH_fan_347 3 4 0.0000481074
Fragaria x ananassa Fvb4-4 1 CH_fan_44 6 14 0.00000000000335473
Fragaria vesca Fvb2 1 CH_fve_226 3 3 0.00000921941
Fragaria vesca Fvb4 1 CH_fve_31 7 18 0.0000000000000255665
Gossypium hirsutum D09 1 CH_ghi_388 3 3 0.00000530459
Glycine max Gm04 1 CH_gma_266 3 3 0.00000877364
Gossypium raimondii Chr06 1 CH_gra_212 3 4 0.000011723
Lonicera japonica GWHAAZE00000003 1 CH_lonja_412 3 6 0.0000730913
Lonicera japonica GWHAAZE00000003 1 CH_lonja_512 4 50 0.000347708
Malus domestica Chr13 1 CH_mdo_32 7 13 0.00000000000000171255
Malus domestica Chr16 1 CH_mdo_69 6 11 0.00000000000090093
Medicago truncatula chr3 1 CH_mtr_44 8 14 1.96193e-18
Medicago truncatula chr1 1 CH_mtr_457 3 3 0.0000125596
Nelumbo nucifera chr1 1 CH_nnu_258 3 7 0.0000285243
Oryza sativa ssp. japonica chr02 1 CH_osa_192 3 5 0.000048926
Oryza sativa ssp. japonica chr04 1 CH_osa_68 5 14 0.00000000603821
Petunia axillaris Peaxi162Scf00360 1 CH_pax_87 4 8 0.000000132919
Physcomitrium patens Chr08 1 CH_ppa_236 2 2 0.000367636
Prunus persica Pp02 1 CH_ppe_280 3 3 0.0000147829
Prunus persica Pp01 1 CH_ppe_29 8 8 1.98675e-21
Pisum sativum chr5LG3 1 CH_psa_252 4 35 0.000106832
Papaver somniferum NC_039358.1 1 CH_pso_344 3 3 0.00000498046
Papaver somniferum NC_039362.1 1 CH_pso_385 3 4 0.0000199162
Populus trichocarpa Chr07 1 CH_ptr_231 4 9 0.00000149029
Populus trichocarpa Chr08 1 CH_ptr_349 3 5 0.000163987
Phaseolus vulgaris Chr09 1 CH_pvu_113 4 4 0.0000000243652
Phaseolus vulgaris Chr05 1 CH_pvu_237 3 3 0.0000265279
Phaseolus vulgaris Chr07 1 CH_pvu_439 3 6 0.000529404
Quercus lobata 9 1 CH_qlo_342 4 5 0.00000000999867
Rosa chinensis RcHm_v2.0_Chr4 1 CH_rch_77 6 10 0.000000000000047975
Rhododendron simsii chr03 1 CH_rsi_102 5 8 0.000000000112791
Rhododendron simsii chr04 1 CH_rsi_82 5 6 0.0000000000120953
Striga asiatica scaffold44 1 CH_sas_3 5 8 0.0000000000549895
Striga asiatica scaffold60 1 CH_sas_32 3 3 0.00000478708
Striga asiatica scaffold39 1 CH_sas_48 3 5 0.000019141
Salvia bowleyana GWHASIU00000007 1 CH_sbo_226 3 4 0.0000101324
Salvia bowleyana GWHASIU00000006 1 CH_sbo_361 4 52 0.000230988
Salix brachista GWHAAZH00000008 1 CH_sbr_206 3 4 0.000048197
Salix brachista GWHAAZH00000001 1 CH_sbr_42 5 5 0.00000000000502713
Simmondsia chinensis GWHAASQ00000005 1 CH_sci_22 6 9 0.00000000000194329
Simmondsia chinensis GWHAASQ00000017 1 CH_sci_24 6 10 0.00000000000485446
Sechium edule LG03 1 CH_sed_161 3 3 0.00001756
Sechium edule LG13 1 CH_sed_162 3 3 0.00001756
Sechium edule LG11 1 CH_sed_77 4 5 0.0000000688632
Sequoiadendron giganteum chr6 1 CH_sgi_351 4 5 0.00000000123975
Sequoiadendron giganteum chr1 1 CH_sgi_644 3 4 0.00000407161
Trochodendron aralioides group0 1 CH_tar_307 3 8 0.000169282
Theobroma cacao Chromosome_3 1 CH_tca_150 4 7 0.0000000980596
Theobroma cacao Chromosome_2 1 CH_tca_229 3 3 0.00000547137
Theobroma cacao Chromosome_4 1 CH_tca_250 3 4 0.0000218763
Tarenaya hassleriana NW_010964923.1 1 CH_tha_115 3 5 0.000083347
Tarenaya hassleriana NW_010960188.1 1 CH_tha_74 4 12 0.0000024425
Trifolium pratense Tp57577_TGAC_v2_LG5 1 CH_tpr_117 4 13 0.00000045944
Tripterygium wilfordii NC_052245.1 1 CH_twi_163 3 4 0.0000287078
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_178 3 3 0.0000125513
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_26 7 12 0.00000000000000201933
Vigna mungo CM024072.1 1 CH_vmu_136 3 3 0.00000425862
Vitis vinifera chr14 1 CH_vvi_228 3 4 0.000007635
Aethionema arabicum LG-11 2 CH_aar_255 3 13 0.000782823
Acer truncatum chr7 2 CH_acertr_166 3 3 0.00000062622
Actinidia chinensis Lachesis_group3 2 CH_ach_76 4 24 0.0000245738
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 2 CH_arhy_255 4 7 0.000000314938
Brassica carinata ChrC09 2 CH_bca_439 3 3 0.00000578233
Brassica carinata ChrB04 2 CH_bca_440 3 3 0.00000578233
Brassica oleracea C1 2 CH_bol_60 4 4 0.0000000018387
Brassica rapa A01 2 CH_bra_51 5 9 0.000000000258762
Camellia sinensis var. sinensis Chr1 2 CH_camsi_207 6 41 0.000000011972
Camellia sinensis var. sinensis Chr6 2 CH_camsi_424 4 13 0.00000564268
Cannabis sativa NC_044377.1 2 CH_cansat_176 3 4 0.000017586
Coffea canephora chr2 2 CH_ccan_51 4 15 0.000000000431702
Citrus clementina scaffold_9 2 CH_ccl_345 3 4 0.0000927987
Citrus clementina scaffold_9 2 CH_ccl_8 13 17 1.74814e-33
Carya illinoinensis Chr10 2 CH_cil_292 3 3 0.0000065698
Cucumis melo chr06 2 CH_cme_61 4 4 0.00000000272572
Capsella rubella scaffold_6 2 CH_cru_233 3 5 0.0000364602
Cucumis sativus L. chr3 2 CH_csa_76 4 4 0.00000000676462
Davidia involucrata GWHABJS00000016 2 CH_din_196 3 4 0.00000682688
Eucalyptus grandis Chr08 2 CH_egr_434 4 6 0.000000079819
Eucalyptus grandis Chr06 2 CH_egr_588 3 3 0.00000910001
Erythranthe guttata scaffold_7 2 CH_egut_165 4 5 0.00000013745
Erythranthe guttata scaffold_6 2 CH_egut_255 3 3 0.0000290612
Erythranthe guttata scaffold_12 2 CH_egut_256 3 3 0.0000290612
Erythranthe guttata scaffold_12 2 CH_egut_63 8 49 0.00000000000642565
Fragaria x ananassa Fvb4-1 2 CH_fan_347 3 4 0.0000481074
Fragaria x ananassa Fvb4-4 2 CH_fan_44 6 14 0.00000000000335473
Fragaria vesca Fvb2 2 CH_fve_226 3 3 0.00000921941
Fragaria vesca Fvb4 2 CH_fve_31 7 18 0.0000000000000255665
Gossypium hirsutum D09 2 CH_ghi_388 3 3 0.00000530459
Glycine max Gm04 2 CH_gma_266 3 3 0.00000877364
Gossypium raimondii Chr06 2 CH_gra_212 3 4 0.000011723
Lotus japonicus chr1 2 CH_lja_226 3 3 0.0000155247
Lonicera japonica GWHAAZE00000003 2 CH_lonja_412 3 6 0.0000730913
Lonicera japonica GWHAAZE00000003 2 CH_lonja_512 4 50 0.000347708
Malus domestica Chr13 2 CH_mdo_32 7 13 0.00000000000000171255
Malus domestica Chr16 2 CH_mdo_69 6 11 0.00000000000090093
Nelumbo nucifera chr1 2 CH_nnu_258 3 7 0.0000285243
Oryza sativa ssp. japonica chr02 2 CH_osa_192 3 5 0.000048926
Oryza sativa ssp. japonica chr04 2 CH_osa_68 5 14 0.00000000603821
Petunia axillaris Peaxi162Scf00360 2 CH_pax_87 4 8 0.000000132919
Physcomitrium patens Chr08 2 CH_ppa_236 2 2 0.000367636
Prunus persica Pp02 2 CH_ppe_280 3 3 0.0000147829
Prunus persica Pp01 2 CH_ppe_29 8 8 1.98675e-21
Pisum sativum chr5LG3 2 CH_psa_252 4 35 0.000106832
Papaver somniferum NC_039358.1 2 CH_pso_344 3 3 0.00000498046
Papaver somniferum NC_039362.1 2 CH_pso_385 3 4 0.0000199162
Populus trichocarpa Chr07 2 CH_ptr_231 4 9 0.00000149029
Populus trichocarpa Chr08 2 CH_ptr_349 3 5 0.000163987
Phaseolus vulgaris Chr09 2 CH_pvu_113 4 4 0.0000000243652
Phaseolus vulgaris Chr05 2 CH_pvu_237 3 3 0.0000265279
Phaseolus vulgaris Chr07 2 CH_pvu_439 3 6 0.000529404
Quercus lobata 9 2 CH_qlo_342 4 5 0.00000000999867
Rosa chinensis RcHm_v2.0_Chr4 2 CH_rch_77 6 10 0.000000000000047975
Rhododendron simsii chr03 2 CH_rsi_102 5 8 0.000000000112791
Rhododendron simsii chr04 2 CH_rsi_82 5 6 0.0000000000120953
Striga asiatica scaffold44 2 CH_sas_3 5 8 0.0000000000549895
Striga asiatica scaffold60 2 CH_sas_32 3 3 0.00000478708
Striga asiatica scaffold39 2 CH_sas_48 3 5 0.000019141
Salvia bowleyana GWHASIU00000007 2 CH_sbo_226 3 4 0.0000101324
Salvia bowleyana GWHASIU00000006 2 CH_sbo_361 4 52 0.000230988
Salix brachista GWHAAZH00000008 2 CH_sbr_206 3 4 0.000048197
Salix brachista GWHAAZH00000001 2 CH_sbr_42 5 5 0.00000000000502713
Simmondsia chinensis GWHAASQ00000005 2 CH_sci_22 6 9 0.00000000000194329
Simmondsia chinensis GWHAASQ00000017 2 CH_sci_24 6 10 0.00000000000485446
Sechium edule LG03 2 CH_sed_161 3 3 0.00001756
Sechium edule LG13 2 CH_sed_162 3 3 0.00001756
Sechium edule LG11 2 CH_sed_77 4 5 0.0000000688632
Sequoiadendron giganteum chr6 2 CH_sgi_351 4 5 0.00000000123975
Sequoiadendron giganteum chr1 2 CH_sgi_644 3 4 0.00000407161
Trochodendron aralioides group0 2 CH_tar_307 3 8 0.000169282
Theobroma cacao Chromosome_3 2 CH_tca_150 4 7 0.0000000980596
Theobroma cacao Chromosome_2 2 CH_tca_229 3 3 0.00000547137
Theobroma cacao Chromosome_4 2 CH_tca_250 3 4 0.0000218763
Tarenaya hassleriana NW_010964923.1 2 CH_tha_115 3 5 0.000083347
Tarenaya hassleriana NW_010960188.1 2 CH_tha_74 4 12 0.0000024425
Trifolium pratense Tp57577_TGAC_v2_LG5 2 CH_tpr_117 4 13 0.00000045944
Tripterygium wilfordii NC_052245.1 2 CH_twi_163 3 4 0.0000287078
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_178 3 3 0.0000125513
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_26 7 12 0.00000000000000201933
Vigna mungo CM024072.1 2 CH_vmu_136 3 3 0.00000425862
Vitis vinifera chr14 2 CH_vvi_228 3 4 0.000007635

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001