Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.APC superfamily.AAAP family.gamma-aminobutyric acid transporter (GAT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr12 1 CH_acertr_44 4 4 0.000000000073583
Camellia sinensis var. sinensis Chr7 1 CH_camsi_877 2 2 0.000687821
Corylus avellana 1 1 CH_cav_54 4 6 0.000000000709716
Carpinus fangiana Cfa04 1 CH_cfa_348 2 2 0.000454408
Cardamine hirsuta Chr1 1 CH_chi_298 2 2 0.000207361
Cucumis melo chr10 1 CH_cme_88 3 3 0.0000000667579
Carica papaya supercontig_47 1 CH_cpa_214 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_2169 1 CH_cqu_187 3 3 0.000000404122
Chenopodium quinoa C_Quinoa_Scaffold_3389 1 CH_cqu_224 3 4 0.00000161625
Cucumis sativus L. chr5 1 CH_csa_111 3 3 0.000000104528
Daucus carota DCARv2_Chr2 1 CH_dca_428 2 2 0.000637775
Fragaria vesca Fvb7 1 CH_fve_453 2 2 0.000589102
Glycine max Gm13 1 CH_gma_191 3 3 0.000000475419
Helianthus annuus HanXRQChr13 1 CH_han_731 2 2 0.0008115
Manihot esculenta Chromosome02 1 CH_mes_480 3 27 0.000912986
Marchantia polymorpha scaffold_32 1 CH_mpo_77 2 2 0.000110442
Olea europaea chr13 1 CH_oeu_303 2 2 0.000320273
Populus trichocarpa Chr08 1 CH_ptr_500 2 2 0.000578001
Phaseolus vulgaris Chr11 1 CH_pvu_141 3 3 0.000000161953
Quercus lobata 4 1 CH_qlo_1015 2 2 0.000774433
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_84 5 8 0.00000000000013364
Sechium edule LG07 1 CH_sed_334 2 2 0.000713419
Sequoiadendron giganteum chr8 1 CH_sgi_236 6 27 0.000000000000842135
Trochodendron aralioides group2 1 CH_tar_433 2 2 0.00036022
Theobroma cacao Chromosome_3 1 CH_tca_434 2 2 0.000732386
Vitis vinifera chr13 1 CH_vvi_185 3 4 0.00000069421
Acer truncatum chr12 2 CH_acertr_44 4 4 0.000000000073583
Camellia sinensis var. sinensis Chr7 2 CH_camsi_877 2 2 0.000687821
Corylus avellana 1 2 CH_cav_54 4 6 0.000000000709716
Carpinus fangiana Cfa04 2 CH_cfa_348 2 2 0.000454408
Cardamine hirsuta Chr1 2 CH_chi_298 2 2 0.000207361
Cucumis melo chr10 2 CH_cme_88 3 3 0.0000000667579
Carica papaya supercontig_47 2 CH_cpa_214 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_2169 2 CH_cqu_187 3 3 0.000000404122
Chenopodium quinoa C_Quinoa_Scaffold_3389 2 CH_cqu_224 3 4 0.00000161625
Cucumis sativus L. chr5 2 CH_csa_111 3 3 0.000000104528
Daucus carota DCARv2_Chr2 2 CH_dca_428 2 2 0.000637775
Fragaria vesca Fvb7 2 CH_fve_453 2 2 0.000589102
Glycine max Gm13 2 CH_gma_191 3 3 0.000000475419
Helianthus annuus HanXRQChr13 2 CH_han_731 2 2 0.0008115
Manihot esculenta Chromosome02 2 CH_mes_480 3 27 0.000912986
Marchantia polymorpha scaffold_32 2 CH_mpo_77 2 2 0.000110442
Olea europaea chr13 2 CH_oeu_303 2 2 0.000320273
Populus trichocarpa Chr08 2 CH_ptr_500 2 2 0.000578001
Phaseolus vulgaris Chr11 2 CH_pvu_141 3 3 0.000000161953
Quercus lobata 4 2 CH_qlo_1015 2 2 0.000774433
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_84 5 8 0.00000000000013364
Sechium edule LG07 2 CH_sed_334 2 2 0.000713419
Sequoiadendron giganteum chr8 2 CH_sgi_236 6 27 0.000000000000842135
Trochodendron aralioides group2 2 CH_tar_433 2 2 0.00036022
Theobroma cacao Chromosome_3 2 CH_tca_434 2 2 0.000732386
Vitis vinifera chr13 2 CH_vvi_185 3 4 0.00000069421

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001