Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.APC superfamily.AAAP family.amino acid transporter (LHT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_369 1 CH_aag_183 2 3 0.000722263
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 1 CH_amhyb_265 2 2 0.000841751
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 1 CH_arhy_363 3 3 0.00000604342
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 1 CH_arhy_364 3 3 0.00000604342
Camellia sinensis var. sinensis Chr9 1 CH_camsi_276 5 35 0.000000124099
Camellia sinensis var. sinensis Chr1 1 CH_camsi_501 3 5 0.0000305446
Capsicum annuum PGAv.1.6.scaffold473 1 CH_can_174 3 3 0.00000122846
Coffea canephora chr11 1 CH_ccan_322 2 5 0.000459956
Chenopodium quinoa C_Quinoa_Scaffold_3500 1 CH_cqu_228 4 15 0.00000168283
Chenopodium quinoa C_Quinoa_Scaffold_1534 1 CH_cqu_394 3 8 0.000182463
Erigeron canadensis Conyza_canadensis_scaffold:4 1 CH_eca_72 5 16 0.000000000578769
Eucalyptus grandis Chr10 1 CH_egr_158 6 7 0.00000000000000586869
Fragaria x ananassa Fvb2-4 1 CH_fan_128 4 6 0.0000000656122
Fragaria x ananassa Fvb4-4 1 CH_fan_342 3 4 0.0000402512
Fragaria x ananassa Fvb4-3 1 CH_fan_343 3 4 0.0000402512
Fragaria x ananassa Fvb2-2 1 CH_fan_500 3 7 0.000351844
Fragaria vesca Fvb2 1 CH_fve_45 5 6 0.00000000000464278
Helianthus annuus HanXRQChr15 1 CH_han_316 3 3 0.0000018278
Lupinus albus Lalb_Chr23 1 CH_lal_128 3 3 0.00000400363
Lactuca sativa Lsat_1_v8_lg_4 1 CH_lsa_113 4 5 0.00000000145628
Malus domestica Chr05 1 CH_mdo_169 4 5 0.0000000103444
Medicago truncatula chr6 1 CH_mtr_296 4 10 0.000000169101
Prunus persica Pp08 1 CH_ppe_163 4 6 0.0000000254816
Prunus persica Pp03 1 CH_ppe_249 3 3 0.00000379798
Pisum sativum chr1LG6 1 CH_psa_178 3 4 0.0000133182
Populus trichocarpa Chr04 1 CH_ptr_227 3 3 0.00000143327
Phaseolus vulgaris Chr08 1 CH_pvu_200 3 3 0.00000294754
Quercus lobata 11 1 CH_qlo_215 6 22 0.0000000000237478
Quercus lobata 3 1 CH_qlo_729 3 6 0.0000910669
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_203 5 19 0.0000000044648
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_245 4 7 0.0000000397817
Salvia bowleyana GWHASIU00000005 1 CH_sbo_75 5 12 0.0000000000508968
Sequoiadendron giganteum chr1 1 CH_sgi_1361 2 2 0.000730727
Solanum pennellii Spenn-ch02 1 CH_spe_175 3 3 0.000000652882
Trochodendron aralioides group0 1 CH_tar_220 3 5 0.0000196697
Vitis vinifera chr1 1 CH_vvi_71 6 22 0.0000000000127793
Zea mays 6 1 CH_zma_25 5 8 0.00000000000227279
Anthoceros agrestis Sc2ySwM_369 2 CH_aag_183 2 3 0.000722263
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 2 CH_amhyb_265 2 2 0.000841751
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 2 CH_arhy_363 3 3 0.00000604342
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 2 CH_arhy_364 3 3 0.00000604342
Camellia sinensis var. sinensis Chr9 2 CH_camsi_276 5 35 0.000000124099
Camellia sinensis var. sinensis Chr1 2 CH_camsi_501 3 5 0.0000305446
Capsicum annuum PGAv.1.6.scaffold473 2 CH_can_174 3 3 0.00000122846
Coffea canephora chr11 2 CH_ccan_322 2 5 0.000459956
Chenopodium quinoa C_Quinoa_Scaffold_3500 2 CH_cqu_228 4 15 0.00000168283
Chenopodium quinoa C_Quinoa_Scaffold_1534 2 CH_cqu_394 3 8 0.000182463
Erigeron canadensis Conyza_canadensis_scaffold:4 2 CH_eca_72 5 16 0.000000000578769
Eucalyptus grandis Chr10 2 CH_egr_158 6 7 0.00000000000000586869
Eucalyptus grandis Chr06 2 CH_egr_580 3 3 0.000006834
Eucalyptus grandis Chr09 2 CH_egr_713 3 5 0.000068282
Eucalyptus grandis Chr07 2 CH_egr_806 3 8 0.000238784
Fragaria x ananassa Fvb2-4 2 CH_fan_128 4 6 0.0000000656122
Fragaria x ananassa Fvb4-4 2 CH_fan_342 3 4 0.0000402512
Fragaria x ananassa Fvb4-3 2 CH_fan_343 3 4 0.0000402512
Fragaria x ananassa Fvb2-2 2 CH_fan_500 3 7 0.000351844
Fragaria vesca Fvb2 2 CH_fve_45 5 6 0.00000000000464278
Helianthus annuus HanXRQChr15 2 CH_han_316 3 3 0.0000018278
Lupinus albus Lalb_Chr23 2 CH_lal_128 3 3 0.00000400363
Lactuca sativa Lsat_1_v8_lg_4 2 CH_lsa_113 4 5 0.00000000145628
Malus domestica Chr05 2 CH_mdo_169 4 5 0.0000000103444
Prunus persica Pp08 2 CH_ppe_163 4 6 0.0000000254816
Prunus persica Pp03 2 CH_ppe_249 3 3 0.00000379798
Pisum sativum chr1LG6 2 CH_psa_178 3 4 0.0000133182
Populus trichocarpa Chr04 2 CH_ptr_227 3 3 0.00000143327
Phaseolus vulgaris Chr08 2 CH_pvu_200 3 3 0.00000294754
Quercus lobata 11 2 CH_qlo_215 6 22 0.0000000000237478
Quercus lobata 3 2 CH_qlo_729 3 6 0.0000910669
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_203 5 19 0.0000000044648
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_245 4 7 0.0000000397817
Salvia bowleyana GWHASIU00000005 2 CH_sbo_75 5 12 0.0000000000508968
Sequoiadendron giganteum chr1 2 CH_sgi_1361 2 2 0.000730727
Solanum pennellii Spenn-ch02 2 CH_spe_175 3 3 0.000000652882
Trochodendron aralioides group0 2 CH_tar_220 3 5 0.0000196697
Vitis vinifera chr1 2 CH_vvi_71 6 22 0.0000000000127793
Zea mays 6 2 CH_zma_25 5 8 0.00000000000227279

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001