Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.MFS superfamily.phosphate transporter (PHT1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-5 1 CH_aar_37 4 4 0.000000000159488
Arabidopsis lyrata scaffold_8 1 CH_aly_138 3 4 0.000000522751
Amaranthus hybridus AmaHy_arrow1_Scaffold_4 1 CH_amhyb_13 5 9 0.00000000000597488
Aquilegia oxysepala CHR05 1 CH_aox_91 3 3 0.000000810447
Arabidopsis thaliana Chr5 1 CH_ath_110 4 15 0.0000000317447
Amborella trichopoda AmTr_v1.0_scaffold00009 1 CH_atr_50 4 6 0.000000000789487
Brassica carinata ChrC06 1 CH_bca_202 4 4 0.0000000301486
Brassica carinata ChrC04 1 CH_bca_22 7 11 0.00000000000000364422
Brassica carinata ChrB07 1 CH_bca_23 7 11 0.00000000000000364422
Brassica carinata ChrC03 1 CH_bca_42 6 9 0.00000000000131574
Brassica carinata ChrC06 1 CH_bca_575 3 3 0.0000408793
Brassica carinata ChrC08 1 CH_bca_64 5 5 0.0000000000219127
Brassica carinata ChrC08 1 CH_bca_65 5 5 0.0000000000219127
Brassica carinata ChrB07 1 CH_bca_88 5 6 0.000000000131396
Brassica napus C02 1 CH_bna_13 7 9 8.99256e-17
Brassica napus C06 1 CH_bna_154 4 4 0.000000013805
Brassica napus C09 1 CH_bna_18 7 11 8.23514e-16
Brassica napus A05 1 CH_bna_417 3 3 0.0000236232
Brassica napus A06 1 CH_bna_418 3 3 0.0000236232
Brassica napus A07 1 CH_bna_419 3 3 0.0000236232
Brassica napus C07 1 CH_bna_420 3 3 0.0000236232
Brassica napus A09 1 CH_bna_56 6 12 0.00000000000413894
Brassica napus A02 1 CH_bna_71 5 6 0.0000000000476137
Brassica oleracea C9 1 CH_bol_18 8 16 3.79222e-18
Brassica oleracea C4 1 CH_bol_195 3 3 0.000010489
Brassica oleracea C6 1 CH_bol_31 5 5 0.00000000000277939
Brassica oleracea C7 1 CH_bol_370 3 7 0.000366517
Brassica oleracea C2 1 CH_bol_47 5 9 0.000000000349609
Brassica rapa A06 1 CH_bra_165 3 3 0.0000124274
Brassica rapa A07 1 CH_bra_166 3 3 0.0000124274
Brassica rapa A02 1 CH_bra_42 5 6 0.0000000000259643
Brassica rapa A09 1 CH_bra_52 5 9 0.000000000544455
Brassica rapa A05 1 CH_bra_68 4 4 0.00000000746966
Beta vulgaris Chr3_EL10_PGA_scaffold7 1 CH_bvu_14 6 6 1.5025e-16
Cannabis sativa NC_044376.1 1 CH_cansat_67 4 4 0.000000000107034
Capsicum annuum PGAv.1.6.scaffold793 1 CH_can_448 2 2 0.000826105
Corylus avellana 3 1 CH_cav_200 3 5 0.0000193873
Corylus avellana 9 1 CH_cav_32 5 7 0.00000000000430892
Ceratophyllum demersum 4 1 CH_cde_11 4 5 0.000000000258641
Ceratophyllum demersum 1 1 CH_cde_46 3 4 0.00000130978
Cardamine hirsuta Chr6 1 CH_chi_42 5 6 0.000000000000258852
Carya illinoinensis Chr01 1 CH_cil_157 4 4 0.000000000975233
Chenopodium quinoa C_Quinoa_Scaffold_4480 1 CH_cqu_18 8 9 1.19911e-20
Chenopodium quinoa C_Quinoa_Scaffold_2933 1 CH_cqu_27 7 7 2.34411e-18
Chenopodium quinoa C_Quinoa_Scaffold_2751 1 CH_cqu_39 6 6 0.00000000000000395733
Chlamydomonas reinhardtii chromosome_16 1 CH_cre_12 3 4 0.000000310433
Capsella rubella scaffold_8 1 CH_cru_37 5 5 0.000000000000169792
Erigeron canadensis Conyza_canadensis_scaffold:5 1 CH_eca_168 3 3 0.000000498357
Eucalyptus grandis Chr08 1 CH_egr_236 5 6 0.0000000000107421
Erythranthe guttata scaffold_7 1 CH_egut_7 9 9 1.28275e-26
Eutrema salsugineum scaffold_17 1 CH_esa_3 9 10 3.21153e-26
Gossypium hirsutum A02 1 CH_ghi_376 3 3 0.00000434206
Gossypium hirsutum D02 1 CH_ghi_377 3 3 0.00000434206
Helianthus annuus HanXRQChr08 1 CH_han_98 5 7 0.00000000000924422
Lonicera japonica GWHAAZE00000003 1 CH_lonja_47 6 7 1.12119e-16
Lactuca sativa Lsat_1_v8_lg_3 1 CH_lsa_104 5 13 0.000000000293735
Lactuca sativa Lsat_1_v8_lg_8 1 CH_lsa_250 3 3 0.00000221936
Magnolia biondii Chr01 1 CH_mbi_114 4 6 0.00000000703347
Magnolia biondii Chr18 1 CH_mbi_133 4 7 0.0000000164075
Magnolia biondii Chr15 1 CH_mbi_224 4 19 0.00000181183
Malus domestica Chr05 1 CH_mdo_319 3 4 0.00000586593
Medicago truncatula chr1 1 CH_mtr_391 3 4 0.00000289631
Nelumbo nucifera chr6 1 CH_nnu_470 2 2 0.000915631
Nelumbo nucifera chr3 1 CH_nnu_471 2 2 0.000915631
Nelumbo nucifera chr1 1 CH_nnu_472 2 2 0.000915631
Nicotiana tabacum Nitab4.5_0000436 1 CH_nta_61 3 3 0.00000216733
Oryza sativa ssp. japonica chr04 1 CH_osa_156 3 5 0.00000478521
Oryza sativa ssp. japonica chr03 1 CH_osa_172 3 6 0.0000119603
Petunia axillaris Peaxi162Scf00006 1 CH_pax_107 3 3 0.000000415808
Papaver somniferum NC_039359.1 1 CH_pso_33 7 12 9.63234e-18
Papaver somniferum NW_020624376.1 1 CH_pso_81 6 16 0.000000000000392631
Populus trichocarpa Chr10 1 CH_ptr_124 4 5 0.00000000207071
Quercus lobata 6 1 CH_qlo_186 5 5 0.00000000000140351
Quercus lobata CM012294 1 CH_qlo_79 7 9 9.15372e-18
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_397 3 5 0.00000524297
Rosa chinensis RcHm_v2.0_Chr4 1 CH_rch_398 3 5 0.00000524297
Rhododendron simsii chr04 1 CH_rsi_26 8 10 8.5037e-23
Salvia bowleyana GWHASIU00000007 1 CH_sbo_198 3 3 0.00000141285
Salix brachista GWHAAZH00000005 1 CH_sbr_138 3 3 0.000000982794
Sequoiadendron giganteum chr6 1 CH_sgi_230 5 6 0.000000000000507348
Sequoiadendron giganteum chr9 1 CH_sgi_654 3 4 0.00000518195
Solanum tuberosum ST4.03ch03 1 CH_stu_238 3 3 0.00000143387
Solanum tuberosum ST4.03ch09 1 CH_stu_239 3 3 0.00000143387
Tarenaya hassleriana NW_010967707.1 1 CH_tha_8 5 5 0.0000000000000824871
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_141 3 3 0.00000108804
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_20 6 8 3.66702e-16
Vanilla planifolia CM028150.1 1 CH_vpl_227 3 13 0.000196344
Zea mays 2 1 CH_zma_42 4 5 0.00000000143351
Aethionema arabicum LG-5 2 CH_aar_37 4 4 0.000000000159488
Arabidopsis lyrata scaffold_8 2 CH_aly_138 3 4 0.000000522751
Amaranthus hybridus AmaHy_arrow1_Scaffold_4 2 CH_amhyb_13 5 9 0.00000000000597488
Aquilegia oxysepala CHR05 2 CH_aox_91 3 3 0.000000810447
Arabidopsis thaliana Chr5 2 CH_ath_110 4 15 0.0000000317447
Amborella trichopoda AmTr_v1.0_scaffold00009 2 CH_atr_50 4 6 0.000000000789487
Brassica carinata ChrC06 2 CH_bca_202 4 4 0.0000000301486
Brassica carinata ChrC04 2 CH_bca_22 7 11 0.00000000000000364422
Brassica carinata ChrB07 2 CH_bca_23 7 11 0.00000000000000364422
Brassica carinata ChrC03 2 CH_bca_42 6 9 0.00000000000131574
Brassica carinata ChrC06 2 CH_bca_575 3 3 0.0000408793
Brassica carinata ChrC08 2 CH_bca_64 5 5 0.0000000000219127
Brassica carinata ChrC08 2 CH_bca_65 5 5 0.0000000000219127
Brassica carinata ChrB07 2 CH_bca_88 5 6 0.000000000131396
Brassica oleracea C9 2 CH_bol_18 8 16 3.79222e-18
Brassica oleracea C4 2 CH_bol_195 3 3 0.000010489
Brassica oleracea C6 2 CH_bol_31 5 5 0.00000000000277939
Brassica oleracea C7 2 CH_bol_370 3 7 0.000366517
Brassica oleracea C2 2 CH_bol_47 5 9 0.000000000349609
Brassica rapa A06 2 CH_bra_165 3 3 0.0000124274
Brassica rapa A07 2 CH_bra_166 3 3 0.0000124274
Brassica rapa A02 2 CH_bra_42 5 6 0.0000000000259643
Brassica rapa A09 2 CH_bra_52 5 9 0.000000000544455
Brassica rapa A05 2 CH_bra_68 4 4 0.00000000746966
Beta vulgaris Chr3_EL10_PGA_scaffold7 2 CH_bvu_14 6 6 1.5025e-16
Cannabis sativa NC_044376.1 2 CH_cansat_67 4 4 0.000000000107034
Capsicum annuum PGAv.1.6.scaffold793 2 CH_can_448 2 2 0.000826105
Corylus avellana 3 2 CH_cav_200 3 5 0.0000193873
Corylus avellana 9 2 CH_cav_32 5 7 0.00000000000430892
Ceratophyllum demersum 4 2 CH_cde_11 4 5 0.000000000258641
Ceratophyllum demersum 1 2 CH_cde_46 3 4 0.00000130978
Cardamine hirsuta Chr6 2 CH_chi_42 5 6 0.000000000000258852
Carya illinoinensis Chr01 2 CH_cil_157 4 4 0.000000000975233
Chenopodium quinoa C_Quinoa_Scaffold_4480 2 CH_cqu_18 8 9 1.19911e-20
Chenopodium quinoa C_Quinoa_Scaffold_2933 2 CH_cqu_27 7 7 2.34411e-18
Chenopodium quinoa C_Quinoa_Scaffold_2751 2 CH_cqu_39 6 6 0.00000000000000395733
Chlamydomonas reinhardtii chromosome_16 2 CH_cre_12 3 4 0.000000310433
Capsella rubella scaffold_8 2 CH_cru_37 5 5 0.000000000000169792
Erigeron canadensis Conyza_canadensis_scaffold:5 2 CH_eca_168 3 3 0.000000498357
Eucalyptus grandis Chr08 2 CH_egr_236 5 6 0.0000000000107421
Eucalyptus grandis Chr06 2 CH_egr_334 4 4 0.0000000036
Erythranthe guttata scaffold_7 2 CH_egut_7 9 9 1.28275e-26
Eutrema salsugineum scaffold_17 2 CH_esa_3 9 10 3.21153e-26
Gossypium hirsutum A02 2 CH_ghi_376 3 3 0.00000434206
Gossypium hirsutum D02 2 CH_ghi_377 3 3 0.00000434206
Helianthus annuus HanXRQChr08 2 CH_han_98 5 7 0.00000000000924422
Lonicera japonica GWHAAZE00000003 2 CH_lonja_47 6 7 1.12119e-16
Lactuca sativa Lsat_1_v8_lg_3 2 CH_lsa_104 5 13 0.000000000293735
Lactuca sativa Lsat_1_v8_lg_8 2 CH_lsa_250 3 3 0.00000221936
Magnolia biondii Chr01 2 CH_mbi_114 4 6 0.00000000703347
Magnolia biondii Chr18 2 CH_mbi_133 4 7 0.0000000164075
Magnolia biondii Chr15 2 CH_mbi_224 4 19 0.00000181183
Malus domestica Chr05 2 CH_mdo_319 3 4 0.00000586593
Nelumbo nucifera chr6 2 CH_nnu_470 2 2 0.000915631
Nelumbo nucifera chr3 2 CH_nnu_471 2 2 0.000915631
Nelumbo nucifera chr1 2 CH_nnu_472 2 2 0.000915631
Nicotiana tabacum Nitab4.5_0000436 2 CH_nta_61 3 3 0.00000216733
Oryza sativa ssp. japonica chr04 2 CH_osa_156 3 5 0.00000478521
Oryza sativa ssp. japonica chr03 2 CH_osa_172 3 6 0.0000119603
Petunia axillaris Peaxi162Scf00006 2 CH_pax_107 3 3 0.000000415808
Papaver somniferum NC_039359.1 2 CH_pso_33 7 12 9.63234e-18
Papaver somniferum NW_020624376.1 2 CH_pso_81 6 16 0.000000000000392631
Populus trichocarpa Chr10 2 CH_ptr_124 4 5 0.00000000207071
Quercus lobata 6 2 CH_qlo_186 5 5 0.00000000000140351
Quercus lobata CM012294 2 CH_qlo_79 7 9 9.15372e-18
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_397 3 5 0.00000524297
Rosa chinensis RcHm_v2.0_Chr4 2 CH_rch_398 3 5 0.00000524297
Rhododendron simsii chr04 2 CH_rsi_26 8 10 8.5037e-23
Salvia bowleyana GWHASIU00000007 2 CH_sbo_198 3 3 0.00000141285
Salix brachista GWHAAZH00000005 2 CH_sbr_138 3 3 0.000000982794
Sequoiadendron giganteum chr6 2 CH_sgi_230 5 6 0.000000000000507348
Sequoiadendron giganteum chr9 2 CH_sgi_654 3 4 0.00000518195
Solanum tuberosum ST4.03ch03 2 CH_stu_238 3 3 0.00000143387
Solanum tuberosum ST4.03ch09 2 CH_stu_239 3 3 0.00000143387
Tarenaya hassleriana NW_010967707.1 2 CH_tha_8 5 5 0.0000000000000824871
Vaccinium macrocarpon chr10_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_141 3 3 0.00000108804
Vaccinium macrocarpon chr6_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_20 6 8 3.66702e-16
Vanilla planifolia CM028150.1 2 CH_vpl_227 3 13 0.000196344
Zea mays 2 2 CH_zma_42 4 5 0.00000000143351

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001