Functional clusters
Information
- Type MapMan
- Description Solute transport.channels.mechanosensitive ion channel (MSL)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr5 | 1 | CH_acertr_218 | 3 | 4 | 0.0000135633 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_6 | 1 | CH_amhyb_49 | 4 | 8 | 0.00000048446 |
| Aquilegia oxysepala | CHR07 | 1 | CH_aox_116 | 3 | 5 | 0.0000159106 |
| Brassica napus | C03 | 1 | CH_bna_528 | 3 | 6 | 0.000167259 |
| Brassica oleracea | C3 | 1 | CH_bol_284 | 3 | 7 | 0.0000992335 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 1 | CH_bvu_203 | 3 | 7 | 0.000102779 |
| Camellia sinensis var. sinensis | Chr10 | 1 | CH_camsi_456 | 4 | 19 | 0.0000118445 |
| Cannabis sativa | NC_044370.1 | 1 | CH_cansat_51 | 5 | 7 | 0.00000000000376739 |
| Corylus avellana | 7 | 1 | CH_cav_161 | 3 | 3 | 0.00000252185 |
| Cucumis melo | chr07 | 1 | CH_cme_137 | 3 | 6 | 0.0000160119 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3674 | 1 | CH_cqu_267 | 3 | 3 | 0.00000774566 |
| Cucumis sativus L. | chr4 | 1 | CH_csa_138 | 3 | 3 | 0.00000125433 |
| Daucus carota | DCARv2_Chr3 | 1 | CH_dca_71 | 4 | 4 | 0.00000000377103 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 1 | CH_eca_146 | 4 | 7 | 0.000000166288 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 1 | CH_eca_311 | 3 | 5 | 0.0000882697 |
| Eucalyptus grandis | Chr03 | 1 | CH_egr_230 | 5 | 5 | 0.00000000000578988 |
| Eucalyptus grandis | Chr07 | 1 | CH_egr_231 | 5 | 5 | 0.00000000000578988 |
| Fragaria x ananassa | Fvb2-4 | 1 | CH_fan_243 | 3 | 3 | 0.00000366696 |
| Fragaria x ananassa | Fvb2-2 | 1 | CH_fan_244 | 3 | 3 | 0.00000366696 |
| Fragaria vesca | Fvb2 | 1 | CH_fve_68 | 4 | 4 | 0.000000000202416 |
| Helianthus annuus | HanXRQChr08 | 1 | CH_han_112 | 5 | 8 | 0.000000000024644 |
| Helianthus annuus | HanXRQChr14 | 1 | CH_han_611 | 3 | 9 | 0.000289248 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 1 | CH_lsa_137 | 4 | 6 | 0.00000000833808 |
| Magnolia biondii | Chr04 | 1 | CH_mbi_56 | 5 | 6 | 0.00000000000154897 |
| Magnolia biondii | Chr05 | 1 | CH_mbi_90 | 5 | 15 | 0.000000000773397 |
| Medicago truncatula | chr3 | 1 | CH_mtr_469 | 3 | 7 | 0.0000194854 |
| Punica granatum | NC_045127.1 | 1 | CH_pgr_235 | 3 | 6 | 0.0000767706 |
| Quercus lobata | CM012294 | 1 | CH_qlo_176 | 5 | 6 | 0.000000000000640059 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 1 | CH_rch_157 | 4 | 4 | 0.000000000345941 |
| Sechium edule | LG13 | 1 | CH_sed_52 | 4 | 4 | 0.00000000259286 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_527 | 3 | 3 | 0.000000124594 |
| Selenicereus undatus | Scaffold_33680 | 1 | CH_sun_33 | 4 | 7 | 0.0000000549364 |
| Tarenaya hassleriana | NW_010969839.1 | 1 | CH_tha_15 | 5 | 6 | 0.00000000000662642 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 1 | CH_tpr_262 | 3 | 8 | 0.0000793169 |
| Acer truncatum | chr5 | 2 | CH_acertr_218 | 3 | 4 | 0.0000135633 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_6 | 2 | CH_amhyb_49 | 4 | 8 | 0.00000048446 |
| Aquilegia oxysepala | CHR07 | 2 | CH_aox_116 | 3 | 5 | 0.0000159106 |
| Brassica oleracea | C3 | 2 | CH_bol_284 | 3 | 7 | 0.0000992335 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 2 | CH_bvu_203 | 3 | 7 | 0.000102779 |
| Camellia sinensis var. sinensis | Chr10 | 2 | CH_camsi_456 | 4 | 19 | 0.0000118445 |
| Cannabis sativa | NC_044370.1 | 2 | CH_cansat_51 | 5 | 7 | 0.00000000000376739 |
| Corylus avellana | 7 | 2 | CH_cav_161 | 3 | 3 | 0.00000252185 |
| Cucumis melo | chr07 | 2 | CH_cme_137 | 3 | 6 | 0.0000160119 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3674 | 2 | CH_cqu_267 | 3 | 3 | 0.00000774566 |
| Cucumis sativus L. | chr4 | 2 | CH_csa_138 | 3 | 3 | 0.00000125433 |
| Daucus carota | DCARv2_Chr3 | 2 | CH_dca_71 | 4 | 4 | 0.00000000377103 |
| Erigeron canadensis | Conyza_canadensis_scaffold:4 | 2 | CH_eca_146 | 4 | 7 | 0.000000166288 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 2 | CH_eca_311 | 3 | 5 | 0.0000882697 |
| Eucalyptus grandis | Chr03 | 2 | CH_egr_230 | 5 | 5 | 0.00000000000578988 |
| Eucalyptus grandis | Chr07 | 2 | CH_egr_231 | 5 | 5 | 0.00000000000578988 |
| Eucalyptus grandis | Chr03 | 2 | CH_egr_413 | 4 | 6 | 0.0000000449379 |
| Fragaria x ananassa | Fvb2-4 | 2 | CH_fan_243 | 3 | 3 | 0.00000366696 |
| Fragaria x ananassa | Fvb2-2 | 2 | CH_fan_244 | 3 | 3 | 0.00000366696 |
| Fragaria vesca | Fvb2 | 2 | CH_fve_68 | 4 | 4 | 0.000000000202416 |
| Helianthus annuus | HanXRQChr08 | 2 | CH_han_112 | 5 | 8 | 0.000000000024644 |
| Helianthus annuus | HanXRQChr14 | 2 | CH_han_611 | 3 | 9 | 0.000289248 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 2 | CH_lsa_137 | 4 | 6 | 0.00000000833808 |
| Magnolia biondii | Chr04 | 2 | CH_mbi_56 | 5 | 6 | 0.00000000000154897 |
| Magnolia biondii | Chr05 | 2 | CH_mbi_90 | 5 | 15 | 0.000000000773397 |
| Punica granatum | NC_045127.1 | 2 | CH_pgr_235 | 3 | 6 | 0.0000767706 |
| Quercus lobata | CM012294 | 2 | CH_qlo_176 | 5 | 6 | 0.000000000000640059 |
| Rosa chinensis | RcHm_v2.0_Chr6 | 2 | CH_rch_157 | 4 | 4 | 0.000000000345941 |
| Sechium edule | LG13 | 2 | CH_sed_52 | 4 | 4 | 0.00000000259286 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_527 | 3 | 3 | 0.000000124594 |
| Selenicereus undatus | Scaffold_33680 | 2 | CH_sun_33 | 4 | 7 | 0.0000000549364 |
| Tarenaya hassleriana | NW_010969839.1 | 2 | CH_tha_15 | 5 | 6 | 0.00000000000662642 |
| Trifolium pratense | Tp57577_TGAC_v2_LG7 | 2 | CH_tpr_262 | 3 | 8 | 0.0000793169 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |