Functional clusters

Information

  • Type MapMan
  • Description Solute transport.primary active transport.ABC superfamily.ABC2 family.subfamily ABCA transporter

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-4 1 CH_aar_76 3 3 0.000000436997
Acer truncatum chr9 1 CH_acertr_176 3 5 0.00000149066
Arabidopsis lyrata scaffold_5 1 CH_aly_15 6 7 1.82336e-16
Arabidopsis lyrata scaffold_8 1 CH_aly_41 5 10 0.0000000000283841
Amaranthus hybridus AmaHy_arrow1_Scaffold_11 1 CH_amhyb_263 2 2 0.000841751
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 1 CH_amhyb_264 2 2 0.000841751
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 1 CH_arhy_740 2 2 0.000838273
Arabidopsis thaliana Chr3 1 CH_ath_10 7 12 2.73087e-20
Arabidopsis thaliana Chr5 1 CH_ath_69 4 7 0.00000000122183
Amborella trichopoda AmTr_v1.0_scaffold00078 1 CH_atr_100 3 5 0.000000378612
Brassica carinata ChrC06 1 CH_bca_168 4 6 0.00000000771132
Brassica carinata ChrC01 1 CH_bca_385 3 3 0.0000020049
Brassica carinata ChrC09 1 CH_bca_386 3 3 0.0000020049
Brassica carinata ChrC06 1 CH_bca_40 5 6 0.000000000000758449
Brassica carinata ChrB01 1 CH_bca_573 3 6 0.0000400735
Brassica napus C03 1 CH_bna_105 4 4 0.00000000100293
Brassica napus A03 1 CH_bna_3 9 18 1.60419e-23
Brassica napus A06 1 CH_bna_322 3 3 0.0000033788
Brassica napus A01 1 CH_bna_352 4 22 0.00000730488
Brassica napus C01 1 CH_bna_386 3 4 0.0000135121
Brassica oleracea C1 1 CH_bol_45 4 5 0.000000000320594
Brassica oleracea C3 1 CH_bol_58 4 5 0.00000000160265
Brassica oleracea C7 1 CH_bol_59 4 5 0.00000000160265
Brassica rapa A06 1 CH_bra_121 3 3 0.00000125794
Brassica rapa A01 1 CH_bra_133 4 22 0.00000236143
Brassica rapa A03 1 CH_bra_58 4 5 0.00000000161989
Camellia sinensis var. sinensis Chr15 1 CH_camsi_20 8 15 4.27607e-22
Cannabis sativa NC_044372.1 1 CH_cansat_25 5 5 8.36782e-16
Capsicum annuum PGAv.1.6.scaffold628 1 CH_can_62 4 4 0.0000000000592037
Corylus avellana 4 1 CH_cav_39 4 6 0.0000000000202813
Coffea canephora chr4 1 CH_ccan_137 3 32 0.0000042794
Citrus clementina scaffold_3 1 CH_ccl_390 2 2 0.000246093
Ceratophyllum demersum 3 1 CH_cde_33 3 3 0.000000187141
Carpinus fangiana Cfa08 1 CH_cfa_41 4 4 0.00000000000651664
Cardamine hirsuta Chr5 1 CH_chi_10 7 7 1.03109e-21
Carya illinoinensis Chr12 1 CH_cil_483 2 2 0.000371897
Citrullus lanatus CG_Chr06 1 CH_cla_200 2 2 0.000532269
Cucumis melo chr02 1 CH_cme_275 2 2 0.000400267
Carica papaya supercontig_107 1 CH_cpa_213 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_3093 1 CH_cqu_287 3 5 0.0000188494
Chenopodium quinoa C_Quinoa_Scaffold_4082 1 CH_cqu_337 3 8 0.000105476
Chenopodium quinoa C_Quinoa_Scaffold_1675 1 CH_cqu_90 4 4 0.000000000580855
Chenopodium quinoa C_Quinoa_Scaffold_3422 1 CH_cqu_91 4 4 0.000000000580855
Capsella rubella scaffold_8 1 CH_cru_200 3 5 0.00000448913
Capsella rubella scaffold_5 1 CH_cru_76 4 5 0.000000000410391
Daucus carota DCARv2_Chr6 1 CH_dca_359 2 2 0.000382665
Davidia involucrata GWHABJS00000019 1 CH_din_39 4 5 0.00000000000938232
Durio zibethinus NW_019168381.1 1 CH_dzi_283 2 2 0.000278093
Erigeron canadensis Conyza_canadensis_scaffold:7 1 CH_eca_140 3 5 0.000000120804
Eucalyptus grandis Chr11 1 CH_egr_240 4 5 0.0000000000150368
Erythranthe guttata scaffold_9 1 CH_egut_11 8 12 1.52371e-23
Eutrema salsugineum scaffold_16 1 CH_esa_13 6 6 2.66278e-17
Fragaria vesca Fvb5 1 CH_fve_147 3 3 0.000000182202
Gossypium hirsutum A12 1 CH_ghi_129 4 6 0.000000000107932
Glycine max Gm04 1 CH_gma_602 2 2 0.00079707
Glycine max Gm06 1 CH_gma_603 2 2 0.00079707
Lupinus albus Lalb_Chr08 1 CH_lal_361 2 2 0.000524824
Lotus japonicus chr1 1 CH_lja_65 4 5 0.000000000191961
Lonicera japonica GWHAAZE00000005 1 CH_lonja_179 3 3 0.0000000215197
Lactuca sativa Lsat_1_v8_lg_1 1 CH_lsa_61 5 15 0.000000000000942986
Magnolia biondii Chr01 1 CH_mbi_200 3 6 0.000000707488
Magnolia biondii Chr19 1 CH_mbi_604 2 2 0.000485661
Manihot esculenta Chromosome06 1 CH_mes_362 2 2 0.000183189
Medicago truncatula chr4 1 CH_mtr_104 5 8 0.000000000000150781
Nicotiana tabacum Nitab4.5_0000269 1 CH_nta_41 3 3 0.000000361222
Nicotiana tabacum Nitab4.5_0000785 1 CH_nta_56 3 4 0.00000144463
Oryza sativa ssp. japonica chr08 1 CH_osa_90 3 3 0.0000000418381
Prunus persica Pp05 1 CH_ppe_218 3 4 0.00000116844
Pisum sativum chr5LG3 1 CH_psa_375 2 2 0.000521635
Populus trichocarpa Chr12 1 CH_ptr_497 2 2 0.000578001
Populus trichocarpa Chr15 1 CH_ptr_498 2 2 0.000578001
Phaseolus vulgaris Chr09 1 CH_pvu_410 2 2 0.000440836
Quercus lobata 10 1 CH_qlo_48 7 10 1.43213e-21
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_301 3 4 0.00000033372
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_805 2 2 0.00083717
Salvia bowleyana GWHASIU00000003 1 CH_sbo_136 4 26 0.0000000632841
Salix brachista GWHAAZH00000015 1 CH_sbr_39 4 4 0.00000000000375355
Sechium edule LG01 1 CH_sed_332 2 2 0.000713419
Sechium edule LG08 1 CH_sed_333 2 2 0.000713419
Solanum lycopersicum SL4.0ch03 1 CH_sly_202 3 4 0.00000115739
Solanum lycopersicum SL4.0ch06 1 CH_sly_95 4 5 0.000000000212303
Selaginella moellendorffii scaffold_13 1 CH_smo_63 3 6 0.0000146373
Schrenkiella parvula ch5-1 1 CH_spa_22 5 5 0.0000000000000726462
Schrenkiella parvula ch2-4 1 CH_spa_59 4 5 0.00000000153727
Solanum pennellii Spenn-ch03 1 CH_spe_176 3 4 0.000000664682
Solanum pennellii Spenn-ch06 1 CH_spe_57 4 4 0.0000000000184805
Solanum tuberosum ST4.03ch06 1 CH_stu_463 2 2 0.000153736
Trochodendron aralioides group0 1 CH_tar_53 4 5 0.000000000227207
Tarenaya hassleriana NW_010966459.1 1 CH_tha_175 2 2 0.000419082
Tripterygium wilfordii NC_052246.1 1 CH_twi_308 2 2 0.00083626
Tripterygium wilfordii NC_052251.1 1 CH_twi_309 2 2 0.00083626
Utricularia gibba unitig_750 1 CH_ugi_286 2 2 0.000734592
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_122 3 3 0.000000259057
Vanilla planifolia CM028159.1 1 CH_vpl_241 2 3 0.000221656
Vitis vinifera chr17 1 CH_vvi_381 2 2 0.000456378
Aethionema arabicum LG-4 2 CH_aar_76 3 3 0.000000436997
Acer truncatum chr9 2 CH_acertr_176 3 5 0.00000149066
Arabidopsis lyrata scaffold_5 2 CH_aly_15 6 7 1.82336e-16
Arabidopsis lyrata scaffold_8 2 CH_aly_41 5 10 0.0000000000283841
Amaranthus hybridus AmaHy_arrow1_Scaffold_11 2 CH_amhyb_263 2 2 0.000841751
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 2 CH_amhyb_264 2 2 0.000841751
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 2 CH_arhy_740 2 2 0.000838273
Arabidopsis thaliana Chr3 2 CH_ath_10 7 12 2.73087e-20
Arabidopsis thaliana Chr5 2 CH_ath_69 4 7 0.00000000122183
Amborella trichopoda AmTr_v1.0_scaffold00078 2 CH_atr_100 3 5 0.000000378612
Brassica carinata ChrC06 2 CH_bca_168 4 6 0.00000000771132
Brassica carinata ChrC01 2 CH_bca_385 3 3 0.0000020049
Brassica carinata ChrC09 2 CH_bca_386 3 3 0.0000020049
Brassica carinata ChrC06 2 CH_bca_40 5 6 0.000000000000758449
Brassica carinata ChrB01 2 CH_bca_573 3 6 0.0000400735
Brassica oleracea C1 2 CH_bol_45 4 5 0.000000000320594
Brassica oleracea C3 2 CH_bol_58 4 5 0.00000000160265
Brassica oleracea C7 2 CH_bol_59 4 5 0.00000000160265
Brassica rapa A06 2 CH_bra_121 3 3 0.00000125794
Brassica rapa A01 2 CH_bra_133 4 22 0.00000236143
Brassica rapa A03 2 CH_bra_58 4 5 0.00000000161989
Camellia sinensis var. sinensis Chr15 2 CH_camsi_20 8 15 4.27607e-22
Cannabis sativa NC_044372.1 2 CH_cansat_25 5 5 8.36782e-16
Capsicum annuum PGAv.1.6.scaffold628 2 CH_can_62 4 4 0.0000000000592037
Corylus avellana 4 2 CH_cav_39 4 6 0.0000000000202813
Coffea canephora chr4 2 CH_ccan_137 3 32 0.0000042794
Citrus clementina scaffold_3 2 CH_ccl_390 2 2 0.000246093
Ceratophyllum demersum 3 2 CH_cde_33 3 3 0.000000187141
Carpinus fangiana Cfa08 2 CH_cfa_41 4 4 0.00000000000651664
Cardamine hirsuta Chr5 2 CH_chi_10 7 7 1.03109e-21
Carya illinoinensis Chr12 2 CH_cil_483 2 2 0.000371897
Citrullus lanatus CG_Chr06 2 CH_cla_200 2 2 0.000532269
Cucumis melo chr02 2 CH_cme_275 2 2 0.000400267
Carica papaya supercontig_107 2 CH_cpa_213 2 2 0.0000950661
Chenopodium quinoa C_Quinoa_Scaffold_3093 2 CH_cqu_287 3 5 0.0000188494
Chenopodium quinoa C_Quinoa_Scaffold_4082 2 CH_cqu_337 3 8 0.000105476
Chenopodium quinoa C_Quinoa_Scaffold_1675 2 CH_cqu_90 4 4 0.000000000580855
Chenopodium quinoa C_Quinoa_Scaffold_3422 2 CH_cqu_91 4 4 0.000000000580855
Capsella rubella scaffold_8 2 CH_cru_200 3 5 0.00000448913
Capsella rubella scaffold_5 2 CH_cru_76 4 5 0.000000000410391
Daucus carota DCARv2_Chr6 2 CH_dca_359 2 2 0.000382665
Davidia involucrata GWHABJS00000019 2 CH_din_39 4 5 0.00000000000938232
Durio zibethinus NW_019168381.1 2 CH_dzi_283 2 2 0.000278093
Erigeron canadensis Conyza_canadensis_scaffold:7 2 CH_eca_140 3 5 0.000000120804
Eucalyptus grandis Chr11 2 CH_egr_240 4 5 0.0000000000150368
Erythranthe guttata scaffold_9 2 CH_egut_11 8 12 1.52371e-23
Eutrema salsugineum scaffold_16 2 CH_esa_13 6 6 2.66278e-17
Fragaria vesca Fvb5 2 CH_fve_147 3 3 0.000000182202
Gossypium hirsutum A12 2 CH_ghi_129 4 6 0.000000000107932
Glycine max Gm04 2 CH_gma_602 2 2 0.00079707
Glycine max Gm06 2 CH_gma_603 2 2 0.00079707
Lupinus albus Lalb_Chr08 2 CH_lal_361 2 2 0.000524824
Lotus japonicus chr1 2 CH_lja_65 4 5 0.000000000191961
Lonicera japonica GWHAAZE00000005 2 CH_lonja_179 3 3 0.0000000215197
Lactuca sativa Lsat_1_v8_lg_1 2 CH_lsa_61 5 15 0.000000000000942986
Magnolia biondii Chr01 2 CH_mbi_200 3 6 0.000000707488
Magnolia biondii Chr19 2 CH_mbi_604 2 2 0.000485661
Manihot esculenta Chromosome06 2 CH_mes_362 2 2 0.000183189
Nicotiana tabacum Nitab4.5_0000269 2 CH_nta_41 3 3 0.000000361222
Nicotiana tabacum Nitab4.5_0000785 2 CH_nta_56 3 4 0.00000144463
Oryza sativa ssp. japonica chr08 2 CH_osa_90 3 3 0.0000000418381
Prunus persica Pp05 2 CH_ppe_218 3 4 0.00000116844
Pisum sativum chr5LG3 2 CH_psa_375 2 2 0.000521635
Populus trichocarpa Chr12 2 CH_ptr_497 2 2 0.000578001
Populus trichocarpa Chr15 2 CH_ptr_498 2 2 0.000578001
Phaseolus vulgaris Chr09 2 CH_pvu_410 2 2 0.000440836
Quercus lobata 10 2 CH_qlo_48 7 10 1.43213e-21
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_301 3 4 0.00000033372
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_805 2 2 0.00083717
Salvia bowleyana GWHASIU00000003 2 CH_sbo_136 4 26 0.0000000632841
Salix brachista GWHAAZH00000015 2 CH_sbr_39 4 4 0.00000000000375355
Sechium edule LG01 2 CH_sed_332 2 2 0.000713419
Sechium edule LG08 2 CH_sed_333 2 2 0.000713419
Solanum lycopersicum SL4.0ch03 2 CH_sly_202 3 4 0.00000115739
Solanum lycopersicum SL4.0ch06 2 CH_sly_95 4 5 0.000000000212303
Selaginella moellendorffii scaffold_13 2 CH_smo_63 3 6 0.0000146373
Schrenkiella parvula ch5-1 2 CH_spa_22 5 5 0.0000000000000726462
Schrenkiella parvula ch2-4 2 CH_spa_59 4 5 0.00000000153727
Solanum pennellii Spenn-ch03 2 CH_spe_176 3 4 0.000000664682
Solanum pennellii Spenn-ch06 2 CH_spe_57 4 4 0.0000000000184805
Solanum tuberosum ST4.03ch06 2 CH_stu_463 2 2 0.000153736
Trochodendron aralioides group0 2 CH_tar_53 4 5 0.000000000227207
Tarenaya hassleriana NW_010966459.1 2 CH_tha_175 2 2 0.000419082
Tripterygium wilfordii NC_052246.1 2 CH_twi_308 2 2 0.00083626
Tripterygium wilfordii NC_052251.1 2 CH_twi_309 2 2 0.00083626
Utricularia gibba unitig_750 2 CH_ugi_286 2 2 0.000734592
Vaccinium macrocarpon chr4_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_122 3 3 0.000000259057
Vanilla planifolia CM028159.1 2 CH_vpl_241 2 3 0.000221656
Vitis vinifera chr17 2 CH_vvi_381 2 2 0.000456378

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001