Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.BART superfamily.AEC family.auxin transporter (PILS)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr3 | 1 | CH_acertr_33 | 6 | 16 | 0.00000000000386987 |
| Aquilegia oxysepala | CHR06 | 1 | CH_aox_30 | 4 | 4 | 0.000000000195007 |
| Arabidopsis thaliana | Chr1 | 1 | CH_ath_402 | 2 | 2 | 0.000601633 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 1 | CH_bvu_116 | 3 | 3 | 0.00000123386 |
| Camellia sinensis var. sinensis | Chr2 | 1 | CH_camsi_178 | 6 | 77 | 0.0000000018352 |
| Coffea canephora | chr7 | 1 | CH_ccan_39 | 4 | 18 | 0.0000000000398539 |
| Carya illinoinensis | Chr07 | 1 | CH_cil_389 | 3 | 8 | 0.000180426 |
| Carya illinoinensis | Chr14 | 1 | CH_cil_50 | 6 | 6 | 1.64891e-16 |
| Cucumis melo | chr06 | 1 | CH_cme_300 | 2 | 3 | 0.000667111 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3036 | 1 | CH_cqu_33 | 6 | 6 | 2.91656e-16 |
| Cucumis sativus L. | chr3 | 1 | CH_csa_132 | 3 | 4 | 0.000000836109 |
| Durio zibethinus | NW_019168492.1 | 1 | CH_dzi_202 | 3 | 10 | 0.0000637311 |
| Fragaria x ananassa | Fvb5-4 | 1 | CH_fan_377 | 3 | 9 | 0.0000872357 |
| Fragaria vesca | Fvb5 | 1 | CH_fve_178 | 3 | 4 | 0.000000728721 |
| Gossypium hirsutum | A05 | 1 | CH_ghi_344 | 3 | 3 | 0.00000189404 |
| Gossypium hirsutum | D05 | 1 | CH_ghi_345 | 3 | 3 | 0.00000189404 |
| Glycine max | Gm16 | 1 | CH_gma_142 | 4 | 7 | 0.000000027797 |
| Gossypium raimondii | Chr09 | 1 | CH_gra_175 | 3 | 3 | 0.00000094848 |
| Helianthus annuus | HanXRQChr14 | 1 | CH_han_123 | 6 | 34 | 0.0000000000481207 |
| Hydrangea macrophylla | Hma1.2p1_0034F.1 | 1 | CH_hma_392 | 2 | 2 | 0.000666519 |
| Lupinus albus | Lalb_Chr05 | 1 | CH_lal_51 | 5 | 13 | 0.00000000014637 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 1 | CH_lsa_249 | 3 | 3 | 0.00000221936 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 1 | CH_lsa_25 | 8 | 21 | 7.80316e-19 |
| Magnolia biondii | Chr01 | 1 | CH_mbi_154 | 3 | 3 | 0.0000000707617 |
| Malus domestica | Chr05 | 1 | CH_mdo_136 | 4 | 6 | 0.00000000175409 |
| Oryza sativa ssp. japonica | chr09 | 1 | CH_osa_386 | 2 | 2 | 0.000792184 |
| Punica granatum | NC_045132.1 | 1 | CH_pgr_120 | 4 | 17 | 0.000000210745 |
| Prunus persica | Pp05 | 1 | CH_ppe_219 | 3 | 4 | 0.00000116844 |
| Pisum sativum | chr4LG4 | 1 | CH_psa_88 | 5 | 40 | 0.0000000287635 |
| Phaseolus vulgaris | Chr10 | 1 | CH_pvu_209 | 3 | 4 | 0.00000388598 |
| Quercus lobata | 4 | 1 | CH_qlo_461 | 3 | 3 | 0.00000047981 |
| Quercus lobata | 6 | 1 | CH_qlo_741 | 3 | 13 | 0.000137004 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 1 | CH_rch_78 | 6 | 17 | 0.0000000000000480477 |
| Salvia bowleyana | GWHASIU00000006 | 1 | CH_sbo_201 | 4 | 25 | 0.00000176314 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_325 | 4 | 4 | 0.000000000248 |
| Selenicereus undatus | Scaffold_33673 | 1 | CH_sun_153 | 3 | 13 | 0.0000791675 |
| Selenicereus undatus | Scaffold_19641 | 1 | CH_sun_65 | 3 | 5 | 0.00000277131 |
| Theobroma cacao | Chromosome_10 | 1 | CH_tca_20 | 7 | 8 | 6.25808e-19 |
| Vigna mungo | CM024078.1 | 1 | CH_vmu_44 | 4 | 4 | 0.000000000400636 |
| Vanilla planifolia | CM028161.1 | 1 | CH_vpl_53 | 4 | 12 | 0.000000197316 |
| Vanilla planifolia | CM028161.1 | 1 | CH_vpl_89 | 3 | 4 | 0.00000540364 |
| Vitis vinifera | chr4 | 1 | CH_vvi_62 | 5 | 6 | 0.000000000000695902 |
| Acer truncatum | chr3 | 2 | CH_acertr_33 | 6 | 16 | 0.00000000000386987 |
| Aquilegia oxysepala | CHR06 | 2 | CH_aox_30 | 4 | 4 | 0.000000000195007 |
| Arabidopsis thaliana | Chr1 | 2 | CH_ath_402 | 2 | 2 | 0.000601633 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 2 | CH_bvu_116 | 3 | 3 | 0.00000123386 |
| Camellia sinensis var. sinensis | Chr2 | 2 | CH_camsi_178 | 6 | 77 | 0.0000000018352 |
| Coffea canephora | chr7 | 2 | CH_ccan_39 | 4 | 18 | 0.0000000000398539 |
| Carya illinoinensis | Chr07 | 2 | CH_cil_389 | 3 | 8 | 0.000180426 |
| Carya illinoinensis | Chr14 | 2 | CH_cil_50 | 6 | 6 | 1.64891e-16 |
| Cucumis melo | chr06 | 2 | CH_cme_300 | 2 | 3 | 0.000667111 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3036 | 2 | CH_cqu_33 | 6 | 6 | 2.91656e-16 |
| Cucumis sativus L. | chr3 | 2 | CH_csa_132 | 3 | 4 | 0.000000836109 |
| Durio zibethinus | NW_019168492.1 | 2 | CH_dzi_202 | 3 | 10 | 0.0000637311 |
| Eucalyptus grandis | Chr10 | 2 | CH_egr_886 | 3 | 17 | 0.000574871 |
| Eucalyptus grandis | Chr09 | 2 | CH_egr_948 | 3 | 20 | 0.000963162 |
| Fragaria x ananassa | Fvb5-4 | 2 | CH_fan_377 | 3 | 9 | 0.0000872357 |
| Fragaria vesca | Fvb5 | 2 | CH_fve_178 | 3 | 4 | 0.000000728721 |
| Gossypium hirsutum | A05 | 2 | CH_ghi_344 | 3 | 3 | 0.00000189404 |
| Gossypium hirsutum | D05 | 2 | CH_ghi_345 | 3 | 3 | 0.00000189404 |
| Glycine max | Gm16 | 2 | CH_gma_142 | 4 | 7 | 0.000000027797 |
| Gossypium raimondii | Chr09 | 2 | CH_gra_175 | 3 | 3 | 0.00000094848 |
| Helianthus annuus | HanXRQChr14 | 2 | CH_han_123 | 6 | 34 | 0.0000000000481207 |
| Hydrangea macrophylla | Hma1.2p1_0034F.1 | 2 | CH_hma_392 | 2 | 2 | 0.000666519 |
| Lupinus albus | Lalb_Chr05 | 2 | CH_lal_51 | 5 | 13 | 0.00000000014637 |
| Lotus japonicus | chr4 | 2 | CH_lja_383 | 3 | 14 | 0.000459412 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 2 | CH_lsa_249 | 3 | 3 | 0.00000221936 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 2 | CH_lsa_25 | 8 | 21 | 7.80316e-19 |
| Magnolia biondii | Chr01 | 2 | CH_mbi_154 | 3 | 3 | 0.0000000707617 |
| Malus domestica | Chr05 | 2 | CH_mdo_136 | 4 | 6 | 0.00000000175409 |
| Oryza sativa ssp. japonica | chr09 | 2 | CH_osa_386 | 2 | 2 | 0.000792184 |
| Punica granatum | NC_045132.1 | 2 | CH_pgr_120 | 4 | 17 | 0.000000210745 |
| Prunus persica | Pp05 | 2 | CH_ppe_219 | 3 | 4 | 0.00000116844 |
| Pisum sativum | chr4LG4 | 2 | CH_psa_88 | 5 | 40 | 0.0000000287635 |
| Phaseolus vulgaris | Chr10 | 2 | CH_pvu_209 | 3 | 4 | 0.00000388598 |
| Quercus lobata | 4 | 2 | CH_qlo_461 | 3 | 3 | 0.00000047981 |
| Quercus lobata | 6 | 2 | CH_qlo_741 | 3 | 13 | 0.000137004 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 2 | CH_rch_78 | 6 | 17 | 0.0000000000000480477 |
| Salvia bowleyana | GWHASIU00000006 | 2 | CH_sbo_201 | 4 | 25 | 0.00000176314 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_325 | 4 | 4 | 0.000000000248 |
| Selenicereus undatus | Scaffold_33673 | 2 | CH_sun_153 | 3 | 13 | 0.0000791675 |
| Selenicereus undatus | Scaffold_19641 | 2 | CH_sun_65 | 3 | 5 | 0.00000277131 |
| Theobroma cacao | Chromosome_10 | 2 | CH_tca_20 | 7 | 8 | 6.25808e-19 |
| Vigna mungo | CM024078.1 | 2 | CH_vmu_44 | 4 | 4 | 0.000000000400636 |
| Vanilla planifolia | CM028161.1 | 2 | CH_vpl_53 | 4 | 12 | 0.000000197316 |
| Vanilla planifolia | CM028161.1 | 2 | CH_vpl_89 | 3 | 4 | 0.00000540364 |
| Vitis vinifera | chr4 | 2 | CH_vvi_62 | 5 | 6 | 0.000000000000695902 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |