Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.APC superfamily.AAAP family.solute transporter (AAAP)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00010 | 1 | CH_atr_30 | 6 | 8 | 0.000000000000108084 |
| Amborella trichopoda | AmTr_v1.0_scaffold00006 | 1 | CH_atr_55 | 5 | 10 | 0.00000000152772 |
| Brassica carinata | ChrC04 | 1 | CH_bca_137 | 5 | 13 | 0.00000000193482 |
| Brassica carinata | ChrC02 | 1 | CH_bca_320 | 4 | 9 | 0.000000454898 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 1 | CH_bvu_151 | 3 | 4 | 0.0000546681 |
| Cannabis sativa | NC_044371.1 | 1 | CH_cansat_197 | 3 | 6 | 0.0000369654 |
| Coffea canephora | chr8 | 1 | CH_ccan_378 | 2 | 2 | 0.000894371 |
| Corchorus olitorius | AWUE01019136.1 | 1 | CH_col_38 | 3 | 4 | 0.00000511818 |
| Carica papaya | supercontig_19 | 1 | CH_cpa_95 | 3 | 3 | 0.0000022369 |
| Chlamydomonas reinhardtii | chromosome_2 | 1 | CH_cre_46 | 2 | 2 | 0.0003412 |
| Daucus carota | DCARv2_Chr6 | 1 | CH_dca_258 | 3 | 5 | 0.0000810757 |
| Davidia involucrata | GWHABJS00000013 | 1 | CH_din_134 | 4 | 8 | 0.000000157006 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 1 | CH_eca_203 | 3 | 3 | 0.00000344319 |
| Helianthus annuus | HanXRQChr09 | 1 | CH_han_351 | 3 | 3 | 0.00000733807 |
| Helianthus annuus | HanXRQChr08 | 1 | CH_han_403 | 3 | 4 | 0.0000293411 |
| Helianthus annuus | HanXRQChr09 | 1 | CH_han_466 | 3 | 5 | 0.0000733248 |
| Lupinus albus | Lalb_Chr10 | 1 | CH_lal_166 | 3 | 4 | 0.0000334357 |
| Lonicera japonica | GWHAAZE00000007 | 1 | CH_lonja_330 | 3 | 4 | 0.0000380931 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 1 | CH_lsa_268 | 3 | 3 | 0.00000527098 |
| Magnolia biondii | Chr15 | 1 | CH_mbi_295 | 3 | 6 | 0.0000257399 |
| Magnolia biondii | Chr02 | 1 | CH_mbi_95 | 4 | 5 | 0.00000000171973 |
| Medicago truncatula | chr6 | 1 | CH_mtr_364 | 4 | 10 | 0.00000103518 |
| Nelumbo nucifera | chr4 | 1 | CH_nnu_145 | 3 | 4 | 0.0000063863 |
| Prunus persica | Pp03 | 1 | CH_ppe_294 | 3 | 4 | 0.0000226947 |
| Pisum sativum | chr3LG5 | 1 | CH_psa_310 | 3 | 6 | 0.000211943 |
| Pisum sativum | chr1LG6 | 1 | CH_psa_42 | 5 | 7 | 0.000000000076646 |
| Papaver somniferum | NC_039362.1 | 1 | CH_pso_299 | 4 | 10 | 0.0000007275 |
| Papaver somniferum | NC_039358.1 | 1 | CH_pso_88 | 6 | 13 | 0.00000000000100394 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_225 | 5 | 22 | 0.0000000166965 |
| Salvia bowleyana | GWHASIU00000001 | 1 | CH_sbo_127 | 5 | 27 | 0.0000000221019 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_491 | 4 | 10 | 0.0000000360163 |
| Theobroma cacao | Chromosome_2 | 1 | CH_tca_246 | 3 | 4 | 0.0000180162 |
| Vitis vinifera | chr19 | 1 | CH_vvi_110 | 4 | 4 | 0.00000000404029 |
| Vitis vinifera | chr14 | 1 | CH_vvi_155 | 4 | 7 | 0.000000141213 |
| Amborella trichopoda | AmTr_v1.0_scaffold00010 | 2 | CH_atr_30 | 6 | 8 | 0.000000000000108084 |
| Amborella trichopoda | AmTr_v1.0_scaffold00006 | 2 | CH_atr_55 | 5 | 10 | 0.00000000152772 |
| Brassica carinata | ChrC04 | 2 | CH_bca_137 | 5 | 13 | 0.00000000193482 |
| Brassica carinata | ChrC02 | 2 | CH_bca_320 | 4 | 9 | 0.000000454898 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 2 | CH_bvu_151 | 3 | 4 | 0.0000546681 |
| Cannabis sativa | NC_044371.1 | 2 | CH_cansat_197 | 3 | 6 | 0.0000369654 |
| Coffea canephora | chr8 | 2 | CH_ccan_378 | 2 | 2 | 0.000894371 |
| Corchorus olitorius | AWUE01019136.1 | 2 | CH_col_38 | 3 | 4 | 0.00000511818 |
| Carica papaya | supercontig_19 | 2 | CH_cpa_95 | 3 | 3 | 0.0000022369 |
| Chlamydomonas reinhardtii | chromosome_2 | 2 | CH_cre_46 | 2 | 2 | 0.0003412 |
| Daucus carota | DCARv2_Chr6 | 2 | CH_dca_258 | 3 | 5 | 0.0000810757 |
| Davidia involucrata | GWHABJS00000013 | 2 | CH_din_134 | 4 | 8 | 0.000000157006 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 2 | CH_eca_203 | 3 | 3 | 0.00000344319 |
| Helianthus annuus | HanXRQChr09 | 2 | CH_han_351 | 3 | 3 | 0.00000733807 |
| Helianthus annuus | HanXRQChr08 | 2 | CH_han_403 | 3 | 4 | 0.0000293411 |
| Helianthus annuus | HanXRQChr09 | 2 | CH_han_466 | 3 | 5 | 0.0000733248 |
| Lupinus albus | Lalb_Chr10 | 2 | CH_lal_166 | 3 | 4 | 0.0000334357 |
| Lotus japonicus | chr1 | 2 | CH_lja_212 | 3 | 3 | 0.00000743253 |
| Lonicera japonica | GWHAAZE00000007 | 2 | CH_lonja_330 | 3 | 4 | 0.0000380931 |
| Lactuca sativa | Lsat_1_v8_lg_3 | 2 | CH_lsa_268 | 3 | 3 | 0.00000527098 |
| Magnolia biondii | Chr15 | 2 | CH_mbi_295 | 3 | 6 | 0.0000257399 |
| Magnolia biondii | Chr02 | 2 | CH_mbi_95 | 4 | 5 | 0.00000000171973 |
| Nelumbo nucifera | chr4 | 2 | CH_nnu_145 | 3 | 4 | 0.0000063863 |
| Prunus persica | Pp03 | 2 | CH_ppe_294 | 3 | 4 | 0.0000226947 |
| Pisum sativum | chr3LG5 | 2 | CH_psa_310 | 3 | 6 | 0.000211943 |
| Pisum sativum | chr1LG6 | 2 | CH_psa_42 | 5 | 7 | 0.000000000076646 |
| Papaver somniferum | NC_039362.1 | 2 | CH_pso_299 | 4 | 10 | 0.0000007275 |
| Papaver somniferum | NC_039358.1 | 2 | CH_pso_88 | 6 | 13 | 0.00000000000100394 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_225 | 5 | 22 | 0.0000000166965 |
| Salvia bowleyana | GWHASIU00000001 | 2 | CH_sbo_127 | 5 | 27 | 0.0000000221019 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_491 | 4 | 10 | 0.0000000360163 |
| Theobroma cacao | Chromosome_2 | 2 | CH_tca_246 | 3 | 4 | 0.0000180162 |
| Vitis vinifera | chr19 | 2 | CH_vvi_110 | 4 | 4 | 0.00000000404029 |
| Vitis vinifera | chr14 | 2 | CH_vvi_155 | 4 | 7 | 0.000000141213 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |