Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.TOC superfamily.sugar efflux transporter (SWEET)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr1 1 CH_acertr_449 3 7 0.000252373
Brassica carinata ChrC05 1 CH_bca_839 3 5 0.000285294
Camellia sinensis var. sinensis Chr11 1 CH_camsi_188 4 4 0.00000000307378
Cannabis sativa NC_044375.1 1 CH_cansat_261 3 5 0.000148591
Cannabis sativa NC_044374.1 1 CH_cansat_71 5 7 0.000000000155423
Capsicum annuum PGAv.1.6.scaffold2 1 CH_can_182 4 8 0.00000176476
Capsicum annuum PGAv.1.6.scaffold65 1 CH_can_230 3 3 0.0000266166
Capsicum annuum PGAv.1.6.scaffold758 1 CH_can_29 7 8 1.31704e-16
Corylus avellana 2 1 CH_cav_185 3 3 0.0000085443
Corylus avellana 4 1 CH_cav_290 3 6 0.0000853579
Coffea canephora chr0 1 CH_ccan_185 3 16 0.0000308238
Carya illinoinensis Chr04 1 CH_cil_332 3 4 0.0000529907
Citrullus lanatus CG_Chr10 1 CH_cla_44 4 5 0.0000000926754
Corchorus olitorius AWUE01015333.1 1 CH_col_4 6 6 3.354e-16
Daucus carota DCARv2_Chr7 1 CH_dca_117 6 43 0.000000127649
Durio zibethinus NW_019168381.1 1 CH_dzi_173 3 3 0.0000159831
Durio zibethinus NW_019167960.1 1 CH_dzi_203 3 4 0.0000638987
Erigeron canadensis Conyza_canadensis_scaffold:2 1 CH_eca_233 3 4 0.000016063
Eucalyptus grandis Chr06 1 CH_egr_193 6 6 0.000000000000144777
Eucalyptus grandis Chr11 1 CH_egr_36 12 17 1.5496e-27
Erythranthe guttata scaffold_4 1 CH_egut_110 5 8 0.00000000237198
Eutrema salsugineum scaffold_1 1 CH_esa_273 3 7 0.000404023
Fragaria x ananassa Fvb2-2 1 CH_fan_146 4 5 0.000000150216
Fragaria vesca Fvb2 1 CH_fve_296 3 5 0.0000921072
Gossypium hirsutum A07 1 CH_ghi_448 3 3 0.0000467146
Gossypium hirsutum D07 1 CH_ghi_449 3 3 0.0000467146
Glycine max Gm04 1 CH_gma_320 3 3 0.0000373766
Glycine max Gm06 1 CH_gma_321 3 3 0.0000373766
Gossypium raimondii Chr01 1 CH_gra_217 3 3 0.0000213839
Helianthus annuus HanXRQChr16 1 CH_han_51 7 14 0.0000000000000241822
Lonicera japonica GWHAAZE00000009 1 CH_lonja_319 4 17 0.0000227635
Lactuca sativa Lsat_1_v8_lg_4 1 CH_lsa_361 3 6 0.000105302
Magnolia biondii Chr18 1 CH_mbi_186 4 11 0.000000346327
Malus domestica Chr05 1 CH_mdo_333 3 3 0.00000875767
Manihot esculenta Chromosome14 1 CH_mes_258 3 3 0.0000204376
Manihot esculenta Chromosome06 1 CH_mes_85 5 5 0.0000000000123854
Olea europaea chr1 1 CH_oeu_343 3 7 0.000436671
Oryza sativa ssp. japonica chr09 1 CH_osa_54 6 25 0.000000000218595
Petunia axillaris Peaxi162Scf00516 1 CH_pax_11 7 7 4.08234e-17
Petunia axillaris Peaxi162Scf00263 1 CH_pax_225 3 4 0.000161912
Punica granatum NC_045134.1 1 CH_pgr_153 4 11 0.0000030475
Punica granatum NC_045127.1 1 CH_pgr_173 3 3 0.0000130066
Papaver somniferum NC_039360.1 1 CH_pso_122 6 20 0.0000000000539765
Papaver somniferum NW_020651082.1 1 CH_pso_209 4 5 0.0000000305589
Papaver somniferum NC_039358.1 1 CH_pso_366 3 3 0.0000123389
Populus trichocarpa Chr15 1 CH_ptr_146 4 4 0.00000000866137
Populus trichocarpa Chr13 1 CH_ptr_195 4 7 0.000000302659
Populus trichocarpa Chr02 1 CH_ptr_267 3 3 0.0000130297
Phaseolus vulgaris Chr04 1 CH_pvu_230 3 3 0.0000163896
Phaseolus vulgaris Chr09 1 CH_pvu_231 3 3 0.0000163896
Quercus lobata 3 1 CH_qlo_301 5 14 0.00000000216401
Quercus lobata 10 1 CH_qlo_703 3 5 0.0000531391
Rosa chinensis RcHm_v2.0_Chr6 1 CH_rch_184 5 10 0.00000000207529
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_277 4 6 0.000000188099
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_448 4 17 0.0000296663
Rhododendron simsii chr03 1 CH_rsi_390 3 5 0.000126293
Rhododendron simsii chr07 1 CH_rsi_89 5 6 0.0000000000331555
Salvia bowleyana GWHASIU00000001 1 CH_sbo_140 4 6 0.0000000743211
Salvia bowleyana GWHASIU00000006 1 CH_sbo_224 3 3 0.00000908262
Sechium edule LG06 1 CH_sed_167 3 3 0.0000250115
Sechium edule LG11 1 CH_sed_235 4 20 0.000106834
Sequoiadendron giganteum chr2 1 CH_sgi_1000 3 3 0.000109842
Sequoiadendron giganteum chr8 1 CH_sgi_110 9 14 9.53919e-19
Sequoiadendron giganteum chr1 1 CH_sgi_1176 4 15 0.000198506
Sequoiadendron giganteum chr10 1 CH_sgi_1286 3 4 0.000438917
Sequoiadendron giganteum chr4 1 CH_sgi_271 6 8 0.00000000000698219
Sequoiadendron giganteum chr6 1 CH_sgi_34 12 15 3.47367e-28
Sequoiadendron giganteum chr7 1 CH_sgi_538 4 4 0.000000147159
Sequoiadendron giganteum chr10 1 CH_sgi_578 4 5 0.000000735003
Solanum lycopersicum SL4.0ch04 1 CH_sly_139 4 4 0.0000000218153
Solanum lycopersicum SL4.0ch06 1 CH_sly_270 3 3 0.0000256315
Solanum lycopersicum SL4.0ch03 1 CH_sly_33 7 7 1.08418e-17
Solanum pennellii Spenn-ch04 1 CH_spe_129 4 5 0.0000000415141
Solanum pennellii Spenn-ch03 1 CH_spe_21 7 7 1.60403e-18
Solanum pennellii Spenn-ch06 1 CH_spe_310 3 4 0.0000533321
Solanum tuberosum ST4.03ch01 1 CH_stu_312 3 3 0.0000143939
Solanum tuberosum ST4.03ch04 1 CH_stu_313 3 3 0.0000143939
Solanum tuberosum ST4.03ch06 1 CH_stu_398 3 4 0.0000575453
Solanum tuberosum ST4.03ch03 1 CH_stu_66 6 9 0.000000000000316856
Selenicereus undatus Scaffold_10417 1 CH_sun_23 5 19 0.00000000726821
Trochodendron aralioides group17 1 CH_tar_192 3 3 0.00000367659
Theobroma cacao Chromosome_3 1 CH_tca_237 3 3 0.0000107014
Theobroma cacao Chromosome_5 1 CH_tca_65 5 6 0.000000000026338
Trifolium pratense Tp57577_TGAC_v2_LG2 1 CH_tpr_194 3 3 0.0000251417
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_106 4 5 0.000000127809
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_189 3 3 0.0000262166
Vigna mungo CM024072.1 1 CH_vmu_142 3 3 0.00000832936
Vigna mungo CM024077.1 1 CH_vmu_162 3 4 0.0000333018
Vanilla planifolia CM028152.1 1 CH_vpl_213 3 4 0.0000957494
Vanilla planifolia CM028163.1 1 CH_vpl_82 6 75 0.00000281469
Vitis vinifera chr14 1 CH_vvi_223 3 3 0.00000590151
Acer truncatum chr1 2 CH_acertr_449 3 7 0.000252373
Brassica carinata ChrC05 2 CH_bca_839 3 5 0.000285294
Camellia sinensis var. sinensis Chr11 2 CH_camsi_188 4 4 0.00000000307378
Cannabis sativa NC_044375.1 2 CH_cansat_261 3 5 0.000148591
Cannabis sativa NC_044374.1 2 CH_cansat_71 5 7 0.000000000155423
Capsicum annuum PGAv.1.6.scaffold2 2 CH_can_182 4 8 0.00000176476
Capsicum annuum PGAv.1.6.scaffold65 2 CH_can_230 3 3 0.0000266166
Capsicum annuum PGAv.1.6.scaffold758 2 CH_can_29 7 8 1.31704e-16
Corylus avellana 2 2 CH_cav_185 3 3 0.0000085443
Corylus avellana 4 2 CH_cav_290 3 6 0.0000853579
Coffea canephora chr0 2 CH_ccan_185 3 16 0.0000308238
Carya illinoinensis Chr04 2 CH_cil_332 3 4 0.0000529907
Citrullus lanatus CG_Chr10 2 CH_cla_44 4 5 0.0000000926754
Corchorus olitorius AWUE01015333.1 2 CH_col_4 6 6 3.354e-16
Daucus carota DCARv2_Chr7 2 CH_dca_117 6 43 0.000000127649
Durio zibethinus NW_019168381.1 2 CH_dzi_173 3 3 0.0000159831
Durio zibethinus NW_019167960.1 2 CH_dzi_203 3 4 0.0000638987
Erigeron canadensis Conyza_canadensis_scaffold:2 2 CH_eca_233 3 4 0.000016063
Eucalyptus grandis Chr06 2 CH_egr_193 6 6 0.000000000000144777
Eucalyptus grandis Chr11 2 CH_egr_36 12 17 1.5496e-27
Eucalyptus grandis Chr08 2 CH_egr_552 4 7 0.00000342505
Eucalyptus grandis Chr10 2 CH_egr_653 4 12 0.0000481952
Eucalyptus grandis Chr02 2 CH_egr_716 3 3 0.0000780001
Eucalyptus grandis Chr06 2 CH_egr_717 3 3 0.0000780001
Erythranthe guttata scaffold_4 2 CH_egut_110 5 8 0.00000000237198
Eutrema salsugineum scaffold_1 2 CH_esa_273 3 7 0.000404023
Fragaria x ananassa Fvb2-2 2 CH_fan_146 4 5 0.000000150216
Fragaria vesca Fvb2 2 CH_fve_296 3 5 0.0000921072
Gossypium hirsutum A07 2 CH_ghi_448 3 3 0.0000467146
Gossypium hirsutum D07 2 CH_ghi_449 3 3 0.0000467146
Glycine max Gm04 2 CH_gma_320 3 3 0.0000373766
Glycine max Gm06 2 CH_gma_321 3 3 0.0000373766
Gossypium raimondii Chr01 2 CH_gra_217 3 3 0.0000213839
Helianthus annuus HanXRQChr16 2 CH_han_51 7 14 0.0000000000000241822
Lotus japonicus chr1 2 CH_lja_346 3 6 0.000352172
Lonicera japonica GWHAAZE00000009 2 CH_lonja_319 4 17 0.0000227635
Lactuca sativa Lsat_1_v8_lg_4 2 CH_lsa_361 3 6 0.000105302
Magnolia biondii Chr18 2 CH_mbi_186 4 11 0.000000346327
Malus domestica Chr05 2 CH_mdo_333 3 3 0.00000875767
Manihot esculenta Chromosome14 2 CH_mes_258 3 3 0.0000204376
Manihot esculenta Chromosome06 2 CH_mes_85 5 5 0.0000000000123854
Olea europaea chr1 2 CH_oeu_343 3 7 0.000436671
Oryza sativa ssp. japonica chr09 2 CH_osa_54 6 25 0.000000000218595
Petunia axillaris Peaxi162Scf00516 2 CH_pax_11 7 7 4.08234e-17
Petunia axillaris Peaxi162Scf00263 2 CH_pax_225 3 4 0.000161912
Punica granatum NC_045134.1 2 CH_pgr_153 4 11 0.0000030475
Punica granatum NC_045127.1 2 CH_pgr_173 3 3 0.0000130066
Papaver somniferum NC_039360.1 2 CH_pso_122 6 20 0.0000000000539765
Papaver somniferum NW_020651082.1 2 CH_pso_209 4 5 0.0000000305589
Papaver somniferum NC_039358.1 2 CH_pso_366 3 3 0.0000123389
Populus trichocarpa Chr15 2 CH_ptr_146 4 4 0.00000000866137
Populus trichocarpa Chr13 2 CH_ptr_195 4 7 0.000000302659
Populus trichocarpa Chr02 2 CH_ptr_267 3 3 0.0000130297
Phaseolus vulgaris Chr04 2 CH_pvu_230 3 3 0.0000163896
Phaseolus vulgaris Chr09 2 CH_pvu_231 3 3 0.0000163896
Quercus lobata 3 2 CH_qlo_301 5 14 0.00000000216401
Quercus lobata 10 2 CH_qlo_703 3 5 0.0000531391
Rosa chinensis RcHm_v2.0_Chr6 2 CH_rch_184 5 10 0.00000000207529
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_277 4 6 0.000000188099
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_448 4 17 0.0000296663
Rhododendron simsii chr03 2 CH_rsi_390 3 5 0.000126293
Rhododendron simsii chr07 2 CH_rsi_89 5 6 0.0000000000331555
Salvia bowleyana GWHASIU00000001 2 CH_sbo_140 4 6 0.0000000743211
Salvia bowleyana GWHASIU00000006 2 CH_sbo_224 3 3 0.00000908262
Sechium edule LG06 2 CH_sed_167 3 3 0.0000250115
Sechium edule LG11 2 CH_sed_235 4 20 0.000106834
Sequoiadendron giganteum chr2 2 CH_sgi_1000 3 3 0.000109842
Sequoiadendron giganteum chr8 2 CH_sgi_110 9 14 9.53919e-19
Sequoiadendron giganteum chr1 2 CH_sgi_1176 4 15 0.000198506
Sequoiadendron giganteum chr10 2 CH_sgi_1286 3 4 0.000438917
Sequoiadendron giganteum chr4 2 CH_sgi_271 6 8 0.00000000000698219
Sequoiadendron giganteum chr6 2 CH_sgi_34 12 15 3.47367e-28
Sequoiadendron giganteum chr7 2 CH_sgi_538 4 4 0.000000147159
Sequoiadendron giganteum chr10 2 CH_sgi_578 4 5 0.000000735003
Solanum lycopersicum SL4.0ch04 2 CH_sly_139 4 4 0.0000000218153
Solanum lycopersicum SL4.0ch06 2 CH_sly_270 3 3 0.0000256315
Solanum lycopersicum SL4.0ch03 2 CH_sly_33 7 7 1.08418e-17
Solanum pennellii Spenn-ch04 2 CH_spe_129 4 5 0.0000000415141
Solanum pennellii Spenn-ch03 2 CH_spe_21 7 7 1.60403e-18
Solanum pennellii Spenn-ch06 2 CH_spe_310 3 4 0.0000533321
Solanum tuberosum ST4.03ch01 2 CH_stu_312 3 3 0.0000143939
Solanum tuberosum ST4.03ch04 2 CH_stu_313 3 3 0.0000143939
Solanum tuberosum ST4.03ch06 2 CH_stu_398 3 4 0.0000575453
Solanum tuberosum ST4.03ch03 2 CH_stu_66 6 9 0.000000000000316856
Selenicereus undatus Scaffold_10417 2 CH_sun_23 5 19 0.00000000726821
Trochodendron aralioides group17 2 CH_tar_192 3 3 0.00000367659
Theobroma cacao Chromosome_3 2 CH_tca_237 3 3 0.0000107014
Theobroma cacao Chromosome_5 2 CH_tca_65 5 6 0.000000000026338
Trifolium pratense Tp57577_TGAC_v2_LG2 2 CH_tpr_194 3 3 0.0000251417
Vaccinium macrocarpon chr2_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_106 4 5 0.000000127809
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_189 3 3 0.0000262166
Vigna mungo CM024072.1 2 CH_vmu_142 3 3 0.00000832936
Vigna mungo CM024077.1 2 CH_vmu_162 3 4 0.0000333018
Vanilla planifolia CM028152.1 2 CH_vpl_213 3 4 0.0000957494
Vanilla planifolia CM028163.1 2 CH_vpl_82 6 75 0.00000281469
Vitis vinifera chr14 2 CH_vvi_223 3 3 0.00000590151

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001