Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.CDF superfamily.CDF family.manganese cation transporter (Mn-CDF)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr1 | 1 | CH_acertr_125 | 3 | 3 | 0.00000007455 |
| Cannabis sativa | NC_044371.1 | 1 | CH_cansat_399 | 2 | 2 | 0.000984963 |
| Corylus avellana | 4 | 1 | CH_cav_168 | 3 | 5 | 0.00000308523 |
| Citrus clementina | scaffold_9 | 1 | CH_ccl_483 | 2 | 2 | 0.000820311 |
| Carpinus fangiana | Cfa08 | 1 | CH_cfa_61 | 4 | 4 | 0.000000000164219 |
| Carya illinoinensis | Chr11 | 1 | CH_cil_149 | 4 | 5 | 0.000000000450038 |
| Carica papaya | supercontig_32 | 1 | CH_cpa_344 | 2 | 2 | 0.000570396 |
| Chlamydomonas reinhardtii | chromosome_3 | 1 | CH_cre_13 | 3 | 6 | 0.000000388014 |
| Durio zibethinus | NW_019168270.1 | 1 | CH_dzi_125 | 3 | 4 | 0.00000108259 |
| Fragaria x ananassa | Fvb3-4 | 1 | CH_fan_256 | 3 | 5 | 0.0000049754 |
| Fragaria x ananassa | Fvb3-3 | 1 | CH_fan_257 | 3 | 5 | 0.0000049754 |
| Fragaria x ananassa | Fvb3-2 | 1 | CH_fan_282 | 3 | 6 | 0.00000994959 |
| Magnolia biondii | Chr18 | 1 | CH_mbi_259 | 3 | 7 | 0.00000693144 |
| Malus domestica | Chr05 | 1 | CH_mdo_283 | 3 | 5 | 0.00000181155 |
| Nelumbo nucifera | chr7 | 1 | CH_nnu_405 | 2 | 2 | 0.000436015 |
| Populus trichocarpa | Chr10 | 1 | CH_ptr_105 | 4 | 4 | 0.000000000191187 |
| Populus trichocarpa | Chr01 | 1 | CH_ptr_213 | 3 | 3 | 0.000000826885 |
| Quercus lobata | 4 | 1 | CH_qlo_2 | 24 | 80 | 3.54443e-57 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_433 | 3 | 12 | 0.0000183429 |
| Salvia bowleyana | GWHASIU00000004 | 1 | CH_sbo_171 | 3 | 4 | 0.000000434684 |
| Salix brachista | GWHAAZH00000010 | 1 | CH_sbr_69 | 4 | 5 | 0.000000000472873 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_166 | 5 | 6 | 0.00000000000000532259 |
| Theobroma cacao | Chromosome_7 | 1 | CH_tca_187 | 3 | 4 | 0.000000643614 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 1 | CH_tpr_410 | 2 | 2 | 0.000756974 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_369 | 2 | 2 | 0.000557543 |
| Acer truncatum | chr1 | 2 | CH_acertr_125 | 3 | 3 | 0.00000007455 |
| Cannabis sativa | NC_044371.1 | 2 | CH_cansat_399 | 2 | 2 | 0.000984963 |
| Corylus avellana | 4 | 2 | CH_cav_168 | 3 | 5 | 0.00000308523 |
| Citrus clementina | scaffold_9 | 2 | CH_ccl_483 | 2 | 2 | 0.000820311 |
| Carpinus fangiana | Cfa08 | 2 | CH_cfa_61 | 4 | 4 | 0.000000000164219 |
| Carya illinoinensis | Chr11 | 2 | CH_cil_149 | 4 | 5 | 0.000000000450038 |
| Carica papaya | supercontig_32 | 2 | CH_cpa_344 | 2 | 2 | 0.000570396 |
| Chlamydomonas reinhardtii | chromosome_3 | 2 | CH_cre_13 | 3 | 6 | 0.000000388014 |
| Durio zibethinus | NW_019168270.1 | 2 | CH_dzi_125 | 3 | 4 | 0.00000108259 |
| Eucalyptus grandis | Chr06 | 2 | CH_egr_463 | 3 | 3 | 0.000000179842 |
| Fragaria x ananassa | Fvb3-4 | 2 | CH_fan_256 | 3 | 5 | 0.0000049754 |
| Fragaria x ananassa | Fvb3-3 | 2 | CH_fan_257 | 3 | 5 | 0.0000049754 |
| Fragaria x ananassa | Fvb3-2 | 2 | CH_fan_282 | 3 | 6 | 0.00000994959 |
| Magnolia biondii | Chr18 | 2 | CH_mbi_259 | 3 | 7 | 0.00000693144 |
| Malus domestica | Chr05 | 2 | CH_mdo_283 | 3 | 5 | 0.00000181155 |
| Nelumbo nucifera | chr7 | 2 | CH_nnu_405 | 2 | 2 | 0.000436015 |
| Populus trichocarpa | Chr10 | 2 | CH_ptr_105 | 4 | 4 | 0.000000000191187 |
| Populus trichocarpa | Chr01 | 2 | CH_ptr_213 | 3 | 3 | 0.000000826885 |
| Quercus lobata | 4 | 2 | CH_qlo_2 | 24 | 80 | 3.54443e-57 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_433 | 3 | 12 | 0.0000183429 |
| Salvia bowleyana | GWHASIU00000004 | 2 | CH_sbo_171 | 3 | 4 | 0.000000434684 |
| Salix brachista | GWHAAZH00000010 | 2 | CH_sbr_69 | 4 | 5 | 0.000000000472873 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_166 | 5 | 6 | 0.00000000000000532259 |
| Theobroma cacao | Chromosome_7 | 2 | CH_tca_187 | 3 | 4 | 0.000000643614 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 2 | CH_tpr_410 | 2 | 2 | 0.000756974 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_369 | 2 | 2 | 0.000557543 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |