Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.CDF superfamily.CaCA family.cation exchanger (NCL/EF-CAX)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-6 1 CH_aar_12 6 6 1.19511e-17
Acer truncatum chr2 1 CH_acertr_20 6 19 0.0000000000000297364
Actinidia chinensis Lachesis_group19 1 CH_ach_266 2 2 0.000814819
Actinidia chinensis Lachesis_group0 1 CH_ach_267 2 2 0.000814819
Arabidopsis lyrata scaffold_4 1 CH_aly_413 2 2 0.000660044
Arabidopsis lyrata scaffold_1 1 CH_aly_414 2 2 0.000660044
Aquilegia oxysepala CHR01 1 CH_aox_28 4 4 0.000000000108337
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 1 CH_arhy_331 3 6 0.00000322584
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 1 CH_arhy_359 3 7 0.00000564468
Arabidopsis thaliana Chr2 1 CH_ath_346 2 2 0.000286492
Camellia sinensis var. sinensis Chr5 1 CH_camsi_144 4 6 0.000000000303675
Capsicum annuum PGAv.1.6.scaffold189 1 CH_can_443 2 2 0.000826105
Coffea canephora chr5 1 CH_ccan_276 2 12 0.000234235
Cardamine hirsuta Chr1 1 CH_chi_65 4 4 0.000000000034678
Carya illinoinensis Chr11 1 CH_cil_23 8 11 9.04478e-23
Carica papaya supercontig_7 1 CH_cpa_343 2 2 0.000570396
Chenopodium quinoa C_Quinoa_Scaffold_2127 1 CH_cqu_364 2 2 0.000142146
Capsella rubella scaffold_1 1 CH_cru_368 2 2 0.000438693
Durio zibethinus NW_019168270.1 1 CH_dzi_328 2 2 0.000463489
Erigeron canadensis Conyza_canadensis_scaffold:5 1 CH_eca_17 7 14 1.41844e-17
Eucalyptus grandis Chr06 1 CH_egr_137 6 8 1.99882e-16
Erythranthe guttata scaffold_13 1 CH_egut_175 3 3 0.000000278364
Fragaria x ananassa Fvb3-1 1 CH_fan_206 3 4 0.00000150222
Fragaria x ananassa Fvb3-3 1 CH_fan_39 5 7 0.00000000000149008
Fragaria x ananassa Fvb3-4 1 CH_fan_65 4 4 0.000000000333565
Fragaria vesca Fvb3 1 CH_fve_82 4 6 0.000000000643891
Glycine max Gm12 1 CH_gma_188 3 5 0.000000432146
Glycine max Gm13 1 CH_gma_189 3 5 0.000000432146
Helianthus annuus HanXRQChr10 1 CH_han_185 4 5 0.00000000633008
Helianthus annuus HanXRQChr11 1 CH_han_327 3 3 0.00000344952
Helianthus annuus HanXRQChr13 1 CH_han_413 3 5 0.0000344749
Lupinus albus Lalb_Chr25 1 CH_lal_407 2 2 0.000787236
Lupinus albus Lalb_Chr19 1 CH_lal_408 2 2 0.000787236
Lonicera japonica GWHAAZE00000001 1 CH_lonja_163 4 6 0.0000000096707
Lonicera japonica GWHAAZE00000008 1 CH_lonja_262 3 3 0.00000195829
Lonicera japonica GWHAAZE00000001 1 CH_lonja_295 3 4 0.00000783099
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_111 4 5 0.00000000100822
Lactuca sativa Lsat_1_v8_lg_7 1 CH_lsa_223 3 3 0.000000871892
Magnolia biondii Chr02 1 CH_mbi_143 3 3 0.0000000353808
Malus domestica Chr10 1 CH_mdo_225 3 3 0.000000258848
Malus domestica Chr03 1 CH_mdo_290 3 5 0.00000258786
Marchantia polymorpha scaffold_12 1 CH_mpo_42 3 3 0.000000640404
Medicago truncatula chr2 1 CH_mtr_133 4 8 0.0000000000145647
Nelumbo nucifera chr1 1 CH_nnu_404 2 2 0.000436015
Olea europaea chr21 1 CH_oeu_67 4 10 0.0000000957837
Physcomitrium patens Chr13 1 CH_ppa_294 2 2 0.000612726
Prunus persica Pp04 1 CH_ppe_200 3 4 0.000000333857
Papaver somniferum NC_039365.1 1 CH_pso_346 3 6 0.00000553803
Papaver somniferum NC_039364.1 1 CH_pso_360 3 7 0.00000969054
Phaseolus vulgaris Chr05 1 CH_pvu_100 3 3 0.00000000809765
Quercus lobata 8 1 CH_qlo_171 5 7 0.000000000000516924
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_75 5 7 0.000000000000022276
Rhododendron simsii chr06 1 CH_rsi_53 5 5 0.0000000000000163901
Striga asiatica scaffold1 1 CH_sas_144 2 2 0.000625371
Salvia bowleyana GWHASIU00000004 1 CH_sbo_165 3 3 0.00000037262
Salvia bowleyana GWHASIU00000005 1 CH_sbo_308 4 80 0.0000929136
Simmondsia chinensis GWHAASQ00000003 1 CH_sci_25 4 4 0.0000000000092595
Sequoiadendron giganteum chr1 1 CH_sgi_534 3 4 0.000000142385
Sapria himalayana scaffold59_3208471 1 CH_shi_103 2 2 0.0000571804
Selaginella moellendorffii scaffold_42 1 CH_smo_174 2 2 0.000933707
Trochodendron aralioides group6 1 CH_tar_434 2 2 0.00036022
Theobroma cacao Chromosome_7 1 CH_tca_99 4 8 0.00000000123712
Trifolium pratense Tp57577_TGAC_v2_LG7 1 CH_tpr_189 3 26 0.0000223287
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_125 3 3 0.00000045335
Vigna mungo CM024079.1 1 CH_vmu_114 3 9 0.000000525963
Vitis vinifera chr12 1 CH_vvi_165 3 3 0.000000303754
Vitis vinifera chr19 1 CH_vvi_166 3 3 0.000000303754
Aethionema arabicum LG-6 2 CH_aar_12 6 6 1.19511e-17
Acer truncatum chr2 2 CH_acertr_20 6 19 0.0000000000000297364
Actinidia chinensis Lachesis_group19 2 CH_ach_266 2 2 0.000814819
Actinidia chinensis Lachesis_group0 2 CH_ach_267 2 2 0.000814819
Arabidopsis lyrata scaffold_4 2 CH_aly_413 2 2 0.000660044
Arabidopsis lyrata scaffold_1 2 CH_aly_414 2 2 0.000660044
Aquilegia oxysepala CHR01 2 CH_aox_28 4 4 0.000000000108337
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 2 CH_arhy_331 3 6 0.00000322584
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 2 CH_arhy_359 3 7 0.00000564468
Arabidopsis thaliana Chr2 2 CH_ath_346 2 2 0.000286492
Camellia sinensis var. sinensis Chr5 2 CH_camsi_144 4 6 0.000000000303675
Capsicum annuum PGAv.1.6.scaffold189 2 CH_can_443 2 2 0.000826105
Coffea canephora chr5 2 CH_ccan_276 2 12 0.000234235
Cardamine hirsuta Chr1 2 CH_chi_65 4 4 0.000000000034678
Carya illinoinensis Chr11 2 CH_cil_23 8 11 9.04478e-23
Carica papaya supercontig_7 2 CH_cpa_343 2 2 0.000570396
Chenopodium quinoa C_Quinoa_Scaffold_2127 2 CH_cqu_364 2 2 0.000142146
Capsella rubella scaffold_1 2 CH_cru_368 2 2 0.000438693
Durio zibethinus NW_019168270.1 2 CH_dzi_328 2 2 0.000463489
Erigeron canadensis Conyza_canadensis_scaffold:5 2 CH_eca_17 7 14 1.41844e-17
Eucalyptus grandis Chr06 2 CH_egr_137 6 8 1.99882e-16
Eucalyptus grandis Chr05 2 CH_egr_507 3 3 0.000000847827
Erythranthe guttata scaffold_13 2 CH_egut_175 3 3 0.000000278364
Fragaria x ananassa Fvb3-1 2 CH_fan_206 3 4 0.00000150222
Fragaria x ananassa Fvb3-3 2 CH_fan_39 5 7 0.00000000000149008
Fragaria x ananassa Fvb3-4 2 CH_fan_65 4 4 0.000000000333565
Fragaria vesca Fvb3 2 CH_fve_82 4 6 0.000000000643891
Glycine max Gm12 2 CH_gma_188 3 5 0.000000432146
Glycine max Gm13 2 CH_gma_189 3 5 0.000000432146
Helianthus annuus HanXRQChr10 2 CH_han_185 4 5 0.00000000633008
Helianthus annuus HanXRQChr11 2 CH_han_327 3 3 0.00000344952
Helianthus annuus HanXRQChr13 2 CH_han_413 3 5 0.0000344749
Lupinus albus Lalb_Chr25 2 CH_lal_407 2 2 0.000787236
Lupinus albus Lalb_Chr19 2 CH_lal_408 2 2 0.000787236
Lotus japonicus chr3 2 CH_lja_356 2 4 0.000429016
Lonicera japonica GWHAAZE00000001 2 CH_lonja_163 4 6 0.0000000096707
Lonicera japonica GWHAAZE00000008 2 CH_lonja_262 3 3 0.00000195829
Lonicera japonica GWHAAZE00000001 2 CH_lonja_295 3 4 0.00000783099
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_111 4 5 0.00000000100822
Lactuca sativa Lsat_1_v8_lg_7 2 CH_lsa_223 3 3 0.000000871892
Magnolia biondii Chr02 2 CH_mbi_143 3 3 0.0000000353808
Malus domestica Chr10 2 CH_mdo_225 3 3 0.000000258848
Malus domestica Chr03 2 CH_mdo_290 3 5 0.00000258786
Marchantia polymorpha scaffold_12 2 CH_mpo_42 3 3 0.000000640404
Nelumbo nucifera chr1 2 CH_nnu_404 2 2 0.000436015
Olea europaea chr21 2 CH_oeu_67 4 10 0.0000000957837
Physcomitrium patens Chr13 2 CH_ppa_294 2 2 0.000612726
Prunus persica Pp04 2 CH_ppe_200 3 4 0.000000333857
Papaver somniferum NC_039365.1 2 CH_pso_346 3 6 0.00000553803
Papaver somniferum NC_039364.1 2 CH_pso_360 3 7 0.00000969054
Phaseolus vulgaris Chr05 2 CH_pvu_100 3 3 0.00000000809765
Quercus lobata 8 2 CH_qlo_171 5 7 0.000000000000516924
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_75 5 7 0.000000000000022276
Rhododendron simsii chr06 2 CH_rsi_53 5 5 0.0000000000000163901
Striga asiatica scaffold1 2 CH_sas_144 2 2 0.000625371
Salvia bowleyana GWHASIU00000004 2 CH_sbo_165 3 3 0.00000037262
Salvia bowleyana GWHASIU00000005 2 CH_sbo_308 4 80 0.0000929136
Simmondsia chinensis GWHAASQ00000003 2 CH_sci_25 4 4 0.0000000000092595
Sequoiadendron giganteum chr1 2 CH_sgi_534 3 4 0.000000142385
Sapria himalayana scaffold59_3208471 2 CH_shi_103 2 2 0.0000571804
Selaginella moellendorffii scaffold_42 2 CH_smo_174 2 2 0.000933707
Trochodendron aralioides group6 2 CH_tar_434 2 2 0.00036022
Theobroma cacao Chromosome_7 2 CH_tca_99 4 8 0.00000000123712
Trifolium pratense Tp57577_TGAC_v2_LG7 2 CH_tpr_189 3 26 0.0000223287
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_125 3 3 0.00000045335
Vigna mungo CM024079.1 2 CH_vmu_114 3 9 0.000000525963
Vitis vinifera chr12 2 CH_vvi_165 3 3 0.000000303754
Vitis vinifera chr19 2 CH_vvi_166 3 3 0.000000303754

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001