Functional clusters
Information
- Type MapMan
- Description Solute transport.primary active transport.P-type ATPase superfamily.P2 family.P2B-type calcium cation-transporting ATPase (ACA)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group3 | 1 | CH_ach_20 | 5 | 11 | 0.00000000159861 |
| Avicennia marina | ScioBoG_102837_HRSCAF_103074 | 1 | CH_ama_40 | 3 | 4 | 0.00000981028 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 1 | CH_bvu_115 | 3 | 3 | 0.00000123386 |
| Camellia sinensis var. sinensis | Chr5 | 1 | CH_camsi_15 | 11 | 28 | 1.18342e-24 |
| Corylus avellana | 9 | 1 | CH_cav_80 | 4 | 6 | 0.0000000202892 |
| Citrus clementina | scaffold_5 | 1 | CH_ccl_259 | 3 | 4 | 0.0000329305 |
| Citrus clementina | scaffold_9 | 1 | CH_ccl_415 | 3 | 7 | 0.000287707 |
| Carpinus fangiana | Cfa03 | 1 | CH_cfa_52 | 5 | 8 | 0.0000000000602985 |
| Carpinus fangiana | Cfa02 | 1 | CH_cfa_97 | 4 | 6 | 0.0000000355523 |
| Carya illinoinensis | Chr02 | 1 | CH_cil_111 | 5 | 5 | 0.00000000000893846 |
| Carya illinoinensis | Chr07 | 1 | CH_cil_180 | 4 | 4 | 0.0000000125387 |
| Carya illinoinensis | Chr01 | 1 | CH_cil_371 | 3 | 4 | 0.0000673872 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3820 | 1 | CH_cqu_389 | 3 | 7 | 0.00015655 |
| Daucus carota | DCARv2_Chr8 | 1 | CH_dca_262 | 3 | 6 | 0.000118101 |
| Davidia involucrata | GWHABJS00000016 | 1 | CH_din_273 | 3 | 4 | 0.0000674233 |
| Davidia involucrata | GWHABJS00000002 | 1 | CH_din_35 | 6 | 10 | 0.00000000000108636 |
| Davidia involucrata | GWHABJS00000014 | 1 | CH_din_483 | 3 | 7 | 0.000588981 |
| Durio zibethinus | NW_019168004.1 | 1 | CH_dzi_68 | 4 | 5 | 0.00000000723425 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 1 | CH_eca_124 | 4 | 9 | 0.0000000465703 |
| Eucalyptus grandis | Chr08 | 1 | CH_egr_28 | 12 | 15 | 7.94847e-30 |
| Eucalyptus grandis | Chr08 | 1 | CH_egr_37 | 11 | 13 | 1.72522e-27 |
| Fragaria x ananassa | Fvb4-1 | 1 | CH_fan_273 | 3 | 3 | 0.0000072877 |
| Fragaria x ananassa | Fvb4-3 | 1 | CH_fan_276 | 4 | 18 | 0.00000862769 |
| Fragaria x ananassa | Fvb4-2 | 1 | CH_fan_61 | 5 | 10 | 0.000000000270276 |
| Fragaria vesca | Fvb4 | 1 | CH_fve_225 | 3 | 5 | 0.00000858597 |
| Lonicera japonica | GWHAAZE00000003 | 1 | CH_lonja_108 | 5 | 8 | 0.0000000000836732 |
| Nelumbo nucifera | chr6 | 1 | CH_nnu_37 | 5 | 8 | 0.00000000000938748 |
| Punica granatum | NC_045128.1 | 1 | CH_pgr_174 | 3 | 5 | 0.0000139283 |
| Prunus persica | Pp01 | 1 | CH_ppe_131 | 4 | 4 | 0.00000000226669 |
| Prunus persica | Pp07 | 1 | CH_ppe_253 | 3 | 3 | 0.00000467444 |
| Quercus lobata | 11 | 1 | CH_qlo_231 | 5 | 6 | 0.0000000000543023 |
| Quercus lobata | 6 | 1 | CH_qlo_323 | 6 | 31 | 0.00000000441119 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 1 | CH_rch_16 | 12 | 35 | 2.12349e-28 |
| Rhododendron simsii | chr02 | 1 | CH_rsi_63 | 6 | 12 | 0.000000000000287428 |
| Sequoiadendron giganteum | chr5 | 1 | CH_sgi_1100 | 2 | 2 | 0.000146145 |
| Selaginella moellendorffii | scaffold_1 | 1 | CH_smo_173 | 2 | 2 | 0.000933707 |
| Solanum pennellii | Spenn-ch09 | 1 | CH_spe_190 | 3 | 4 | 0.00000195834 |
| Solanum tuberosum | ST4.03ch09 | 1 | CH_stu_24 | 7 | 8 | 3.9165e-20 |
| Trochodendron aralioides | group2 | 1 | CH_tar_10 | 9 | 17 | 1.2253e-18 |
| Trochodendron aralioides | group17 | 1 | CH_tar_28 | 7 | 15 | 0.000000000000362617 |
| Trochodendron aralioides | group0 | 1 | CH_tar_293 | 5 | 47 | 0.0000829432 |
| Theobroma cacao | Chromosome_5 | 1 | CH_tca_231 | 3 | 4 | 0.00000707859 |
| Actinidia chinensis | Lachesis_group3 | 2 | CH_ach_20 | 5 | 11 | 0.00000000159861 |
| Avicennia marina | ScioBoG_102837_HRSCAF_103074 | 2 | CH_ama_40 | 3 | 4 | 0.00000981028 |
| Beta vulgaris | Chr8_EL10_PGA_scaffold4 | 2 | CH_bvu_115 | 3 | 3 | 0.00000123386 |
| Camellia sinensis var. sinensis | Chr5 | 2 | CH_camsi_15 | 11 | 28 | 1.18342e-24 |
| Corylus avellana | 9 | 2 | CH_cav_80 | 4 | 6 | 0.0000000202892 |
| Citrus clementina | scaffold_5 | 2 | CH_ccl_259 | 3 | 4 | 0.0000329305 |
| Citrus clementina | scaffold_9 | 2 | CH_ccl_415 | 3 | 7 | 0.000287707 |
| Carpinus fangiana | Cfa03 | 2 | CH_cfa_52 | 5 | 8 | 0.0000000000602985 |
| Carpinus fangiana | Cfa02 | 2 | CH_cfa_97 | 4 | 6 | 0.0000000355523 |
| Carya illinoinensis | Chr02 | 2 | CH_cil_111 | 5 | 5 | 0.00000000000893846 |
| Carya illinoinensis | Chr07 | 2 | CH_cil_180 | 4 | 4 | 0.0000000125387 |
| Carya illinoinensis | Chr01 | 2 | CH_cil_371 | 3 | 4 | 0.0000673872 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3820 | 2 | CH_cqu_389 | 3 | 7 | 0.00015655 |
| Daucus carota | DCARv2_Chr8 | 2 | CH_dca_262 | 3 | 6 | 0.000118101 |
| Davidia involucrata | GWHABJS00000016 | 2 | CH_din_273 | 3 | 4 | 0.0000674233 |
| Davidia involucrata | GWHABJS00000002 | 2 | CH_din_35 | 6 | 10 | 0.00000000000108636 |
| Davidia involucrata | GWHABJS00000014 | 2 | CH_din_483 | 3 | 7 | 0.000588981 |
| Durio zibethinus | NW_019168004.1 | 2 | CH_dzi_68 | 4 | 5 | 0.00000000723425 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 2 | CH_eca_124 | 4 | 9 | 0.0000000465703 |
| Eucalyptus grandis | Chr08 | 2 | CH_egr_28 | 12 | 15 | 7.94847e-30 |
| Eucalyptus grandis | Chr08 | 2 | CH_egr_37 | 11 | 13 | 1.72522e-27 |
| Fragaria x ananassa | Fvb4-1 | 2 | CH_fan_273 | 3 | 3 | 0.0000072877 |
| Fragaria x ananassa | Fvb4-3 | 2 | CH_fan_276 | 4 | 18 | 0.00000862769 |
| Fragaria x ananassa | Fvb4-2 | 2 | CH_fan_61 | 5 | 10 | 0.000000000270276 |
| Fragaria vesca | Fvb4 | 2 | CH_fve_225 | 3 | 5 | 0.00000858597 |
| Lonicera japonica | GWHAAZE00000003 | 2 | CH_lonja_108 | 5 | 8 | 0.0000000000836732 |
| Nelumbo nucifera | chr6 | 2 | CH_nnu_37 | 5 | 8 | 0.00000000000938748 |
| Punica granatum | NC_045128.1 | 2 | CH_pgr_174 | 3 | 5 | 0.0000139283 |
| Prunus persica | Pp01 | 2 | CH_ppe_131 | 4 | 4 | 0.00000000226669 |
| Prunus persica | Pp07 | 2 | CH_ppe_253 | 3 | 3 | 0.00000467444 |
| Quercus lobata | 11 | 2 | CH_qlo_231 | 5 | 6 | 0.0000000000543023 |
| Quercus lobata | 6 | 2 | CH_qlo_323 | 6 | 31 | 0.00000000441119 |
| Rosa chinensis | RcHm_v2.0_Chr4 | 2 | CH_rch_16 | 12 | 35 | 2.12349e-28 |
| Rhododendron simsii | chr02 | 2 | CH_rsi_63 | 6 | 12 | 0.000000000000287428 |
| Sequoiadendron giganteum | chr5 | 2 | CH_sgi_1100 | 2 | 2 | 0.000146145 |
| Selaginella moellendorffii | scaffold_1 | 2 | CH_smo_173 | 2 | 2 | 0.000933707 |
| Solanum pennellii | Spenn-ch09 | 2 | CH_spe_190 | 3 | 4 | 0.00000195834 |
| Solanum tuberosum | ST4.03ch09 | 2 | CH_stu_24 | 7 | 8 | 3.9165e-20 |
| Trochodendron aralioides | group2 | 2 | CH_tar_10 | 9 | 17 | 1.2253e-18 |
| Trochodendron aralioides | group17 | 2 | CH_tar_28 | 7 | 15 | 0.000000000000362617 |
| Trochodendron aralioides | group0 | 2 | CH_tar_293 | 5 | 47 | 0.0000829432 |
| Theobroma cacao | Chromosome_5 | 2 | CH_tca_231 | 3 | 4 | 0.00000707859 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |