Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.IT superfamily.DASS family.dicarboxylate:malate antiporter (DIT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-1 1 CH_aar_205 2 2 0.000273698
Arabidopsis lyrata scaffold_8 1 CH_aly_309 2 2 0.000198013
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 1 CH_amhyb_200 2 2 0.000252525
Arabidopsis thaliana Chr5 1 CH_ath_270 2 3 0.0000859476
Camellia sinensis var. sinensis Chr1 1 CH_camsi_728 2 2 0.000275128
Cardamine hirsuta Chr8 1 CH_chi_299 2 2 0.000207361
Chenopodium quinoa C_Quinoa_Scaffold_1257 1 CH_cqu_545 2 2 0.000710732
Chenopodium quinoa C_Quinoa_Scaffold_1040 1 CH_cqu_546 2 2 0.000710732
Capsella rubella scaffold_8 1 CH_cru_321 2 2 0.000219346
Eutrema salsugineum scaffold_6 1 CH_esa_245 2 2 0.00022845
Lonicera japonica GWHAAZE00000002 1 CH_lonja_606 2 2 0.000598874
Lactuca sativa Lsat_1_v8_lg_5 1 CH_lsa_495 2 2 0.000514007
Nelumbo nucifera chr2 1 CH_nnu_344 3 28 0.000186512
Oryza sativa ssp. japonica chr09 1 CH_osa_311 2 2 0.000316874
Physcomitrium patens Chr18 1 CH_ppa_293 2 2 0.000612726
Quercus lobata 11 1 CH_qlo_939 2 3 0.00046464
Rhododendron simsii chr10 1 CH_rsi_491 2 2 0.000387184
Simmondsia chinensis GWHAASQ00000008 1 CH_sci_221 2 2 0.000255428
Sapria himalayana scaffold8_16897533 1 CH_shi_182 2 2 0.000171541
Schrenkiella parvula ch2-4 1 CH_spa_219 2 2 0.000236202
Selenicereus undatus Scaffold_33676 1 CH_sun_276 2 2 0.000726639
Tarenaya hassleriana NW_010960188.1 1 CH_tha_210 2 2 0.00069847
Utricularia gibba unitig_27 1 CH_ugi_288 2 2 0.000734592
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_423 2 2 0.000929238
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_424 2 2 0.000929238
Aethionema arabicum LG-1 2 CH_aar_205 2 2 0.000273698
Arabidopsis lyrata scaffold_8 2 CH_aly_309 2 2 0.000198013
Amaranthus hybridus AmaHy_arrow1_Scaffold_1 2 CH_amhyb_200 2 2 0.000252525
Arabidopsis thaliana Chr5 2 CH_ath_270 2 3 0.0000859476
Camellia sinensis var. sinensis Chr1 2 CH_camsi_728 2 2 0.000275128
Cardamine hirsuta Chr8 2 CH_chi_299 2 2 0.000207361
Chenopodium quinoa C_Quinoa_Scaffold_1257 2 CH_cqu_545 2 2 0.000710732
Chenopodium quinoa C_Quinoa_Scaffold_1040 2 CH_cqu_546 2 2 0.000710732
Capsella rubella scaffold_8 2 CH_cru_321 2 2 0.000219346
Eutrema salsugineum scaffold_6 2 CH_esa_245 2 2 0.00022845
Lonicera japonica GWHAAZE00000002 2 CH_lonja_606 2 2 0.000598874
Lactuca sativa Lsat_1_v8_lg_5 2 CH_lsa_495 2 2 0.000514007
Nelumbo nucifera chr2 2 CH_nnu_344 3 28 0.000186512
Oryza sativa ssp. japonica chr09 2 CH_osa_311 2 2 0.000316874
Physcomitrium patens Chr18 2 CH_ppa_293 2 2 0.000612726
Quercus lobata 11 2 CH_qlo_939 2 3 0.00046464
Rhododendron simsii chr10 2 CH_rsi_491 2 2 0.000387184
Simmondsia chinensis GWHAASQ00000008 2 CH_sci_221 2 2 0.000255428
Sapria himalayana scaffold8_16897533 2 CH_shi_182 2 2 0.000171541
Schrenkiella parvula ch2-4 2 CH_spa_219 2 2 0.000236202
Selenicereus undatus Scaffold_33676 2 CH_sun_276 2 2 0.000726639
Tarenaya hassleriana NW_010960188.1 2 CH_tha_210 2 2 0.00069847
Utricularia gibba unitig_27 2 CH_ugi_288 2 2 0.000734592
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_423 2 2 0.000929238
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_424 2 2 0.000929238

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001