Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.IT superfamily.DASS family.dicarboxylate:malate antiporter (DIT)
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Aethionema arabicum | LG-1 | 1 | CH_aar_205 | 2 | 2 | 0.000273698 |
Arabidopsis lyrata | scaffold_8 | 1 | CH_aly_309 | 2 | 2 | 0.000198013 |
Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 1 | CH_amhyb_200 | 2 | 2 | 0.000252525 |
Arabidopsis thaliana | Chr5 | 1 | CH_ath_270 | 2 | 3 | 0.0000859476 |
Camellia sinensis var. sinensis | Chr1 | 1 | CH_camsi_728 | 2 | 2 | 0.000275128 |
Cardamine hirsuta | Chr8 | 1 | CH_chi_299 | 2 | 2 | 0.000207361 |
Chenopodium quinoa | C_Quinoa_Scaffold_1257 | 1 | CH_cqu_545 | 2 | 2 | 0.000710732 |
Chenopodium quinoa | C_Quinoa_Scaffold_1040 | 1 | CH_cqu_546 | 2 | 2 | 0.000710732 |
Capsella rubella | scaffold_8 | 1 | CH_cru_321 | 2 | 2 | 0.000219346 |
Eutrema salsugineum | scaffold_6 | 1 | CH_esa_245 | 2 | 2 | 0.00022845 |
Lonicera japonica | GWHAAZE00000002 | 1 | CH_lonja_606 | 2 | 2 | 0.000598874 |
Lactuca sativa | Lsat_1_v8_lg_5 | 1 | CH_lsa_495 | 2 | 2 | 0.000514007 |
Nelumbo nucifera | chr2 | 1 | CH_nnu_344 | 3 | 28 | 0.000186512 |
Oryza sativa ssp. japonica | chr09 | 1 | CH_osa_311 | 2 | 2 | 0.000316874 |
Physcomitrium patens | Chr18 | 1 | CH_ppa_293 | 2 | 2 | 0.000612726 |
Quercus lobata | 11 | 1 | CH_qlo_939 | 2 | 3 | 0.00046464 |
Rhododendron simsii | chr10 | 1 | CH_rsi_491 | 2 | 2 | 0.000387184 |
Simmondsia chinensis | GWHAASQ00000008 | 1 | CH_sci_221 | 2 | 2 | 0.000255428 |
Sapria himalayana | scaffold8_16897533 | 1 | CH_shi_182 | 2 | 2 | 0.000171541 |
Schrenkiella parvula | ch2-4 | 1 | CH_spa_219 | 2 | 2 | 0.000236202 |
Selenicereus undatus | Scaffold_33676 | 1 | CH_sun_276 | 2 | 2 | 0.000726639 |
Tarenaya hassleriana | NW_010960188.1 | 1 | CH_tha_210 | 2 | 2 | 0.00069847 |
Utricularia gibba | unitig_27 | 1 | CH_ugi_288 | 2 | 2 | 0.000734592 |
Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_423 | 2 | 2 | 0.000929238 |
Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_424 | 2 | 2 | 0.000929238 |
Aethionema arabicum | LG-1 | 2 | CH_aar_205 | 2 | 2 | 0.000273698 |
Arabidopsis lyrata | scaffold_8 | 2 | CH_aly_309 | 2 | 2 | 0.000198013 |
Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 2 | CH_amhyb_200 | 2 | 2 | 0.000252525 |
Arabidopsis thaliana | Chr5 | 2 | CH_ath_270 | 2 | 3 | 0.0000859476 |
Camellia sinensis var. sinensis | Chr1 | 2 | CH_camsi_728 | 2 | 2 | 0.000275128 |
Cardamine hirsuta | Chr8 | 2 | CH_chi_299 | 2 | 2 | 0.000207361 |
Chenopodium quinoa | C_Quinoa_Scaffold_1257 | 2 | CH_cqu_545 | 2 | 2 | 0.000710732 |
Chenopodium quinoa | C_Quinoa_Scaffold_1040 | 2 | CH_cqu_546 | 2 | 2 | 0.000710732 |
Capsella rubella | scaffold_8 | 2 | CH_cru_321 | 2 | 2 | 0.000219346 |
Eutrema salsugineum | scaffold_6 | 2 | CH_esa_245 | 2 | 2 | 0.00022845 |
Lonicera japonica | GWHAAZE00000002 | 2 | CH_lonja_606 | 2 | 2 | 0.000598874 |
Lactuca sativa | Lsat_1_v8_lg_5 | 2 | CH_lsa_495 | 2 | 2 | 0.000514007 |
Nelumbo nucifera | chr2 | 2 | CH_nnu_344 | 3 | 28 | 0.000186512 |
Oryza sativa ssp. japonica | chr09 | 2 | CH_osa_311 | 2 | 2 | 0.000316874 |
Physcomitrium patens | Chr18 | 2 | CH_ppa_293 | 2 | 2 | 0.000612726 |
Quercus lobata | 11 | 2 | CH_qlo_939 | 2 | 3 | 0.00046464 |
Rhododendron simsii | chr10 | 2 | CH_rsi_491 | 2 | 2 | 0.000387184 |
Simmondsia chinensis | GWHAASQ00000008 | 2 | CH_sci_221 | 2 | 2 | 0.000255428 |
Sapria himalayana | scaffold8_16897533 | 2 | CH_shi_182 | 2 | 2 | 0.000171541 |
Schrenkiella parvula | ch2-4 | 2 | CH_spa_219 | 2 | 2 | 0.000236202 |
Selenicereus undatus | Scaffold_33676 | 2 | CH_sun_276 | 2 | 2 | 0.000726639 |
Tarenaya hassleriana | NW_010960188.1 | 2 | CH_tha_210 | 2 | 2 | 0.00069847 |
Utricularia gibba | unitig_27 | 2 | CH_ugi_288 | 2 | 2 | 0.000734592 |
Vaccinium macrocarpon | chr5_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_423 | 2 | 2 | 0.000929238 |
Vaccinium macrocarpon | chr11_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_424 | 2 | 2 | 0.000929238 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |