Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.DMT superfamily.organic cation transporter (PUP)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-6 1 CH_aar_100 3 3 0.00000357089
Acer truncatum chr13 1 CH_acertr_167 3 3 0.00000062622
Arabidopsis lyrata scaffold_6 1 CH_aly_191 3 3 0.00000869167
Arabidopsis lyrata scaffold_7 1 CH_aly_39 5 6 0.0000000000173751
Arabidopsis lyrata scaffold_2 1 CH_aly_432 3 9 0.000728007
Avicennia marina ScioBoG_3703_HRSCAF_3719 1 CH_ama_38 3 5 0.00000624243
Aquilegia oxysepala CHR06 1 CH_aox_20 5 5 0.00000000000135557
Aquilegia oxysepala CHR06 1 CH_aox_48 4 5 0.0000000140778
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 1 CH_arhy_175 4 5 0.0000000035635
Arabidopsis thaliana Chr4 1 CH_ath_19 6 8 6.59635e-16
Arabidopsis thaliana Chr1 1 CH_ath_190 3 4 0.00000654853
Amborella trichopoda AmTr_v1.0_scaffold00135 1 CH_atr_49 4 6 0.000000000789487
Brassica carinata ChrC07 1 CH_bca_169 4 4 0.00000000793358
Brassica carinata ChrB03 1 CH_bca_498 3 3 0.0000151481
Brassica carinata ChrC08 1 CH_bca_596 3 4 0.000060568
Brassica carinata ChrB04 1 CH_bca_597 3 4 0.000060568
Brassica napus A08 1 CH_bna_168 4 5 0.0000000280341
Brassica napus A01 1 CH_bna_376 3 3 0.0000120935
Brassica napus C01 1 CH_bna_377 3 3 0.0000120935
Brassica napus C05 1 CH_bna_378 3 3 0.0000120935
Brassica napus A06 1 CH_bna_453 3 4 0.0000483567
Brassica rapa A08 1 CH_bra_71 4 5 0.0000000126082
Beta vulgaris Scaffold_0014 1 CH_bvu_131 3 5 0.00000863306
Cannabis sativa NC_044378.1 1 CH_cansat_10 8 9 4.48351e-23
Capsicum annuum PGAv.1.6.scaffold257 1 CH_can_34 6 8 0.0000000000000121279
Citrus clementina scaffold_2 1 CH_ccl_173 3 3 0.000000565268
Ceratophyllum demersum 4 1 CH_cde_13 4 4 0.000000000487788
Ceratophyllum demersum 6 1 CH_cde_47 3 3 0.00000154391
Carpinus fangiana Cfa01 1 CH_cfa_62 4 4 0.000000000164219
Cardamine hirsuta Chr7 1 CH_chi_100 4 4 0.0000000202866
Cardamine hirsuta Chr4 1 CH_chi_37 6 6 0.0000000000000133785
Carya illinoinensis Chr07 1 CH_cil_245 3 3 0.000000691558
Citrullus lanatus CG_Chr03 1 CH_cla_68 3 3 0.000000991629
Cucumis melo chr12 1 CH_cme_110 3 3 0.000000801094
Carica papaya supercontig_14 1 CH_cpa_26 4 4 0.00000000613531
Carica papaya supercontig_36 1 CH_cpa_4 6 6 0.0000000000000021632
Carica papaya supercontig_77 1 CH_cpa_43 4 5 0.0000000306599
Capsella rubella scaffold_7 1 CH_cru_22 6 6 0.00000000000000182293
Cucumis sativus L. chr1 1 CH_csa_137 3 3 0.00000125433
Daucus carota DCARv2_Chr1 1 CH_dca_167 3 3 0.00000414906
Daucus carota DCARv2_Chr6 1 CH_dca_168 3 3 0.00000414906
Davidia involucrata GWHABJS00000020 1 CH_din_185 3 4 0.00000330109
Durio zibethinus NW_019167982.1 1 CH_dzi_11 8 19 3.38556e-17
Durio zibethinus NW_019167949.1 1 CH_dzi_254 3 6 0.000210842
Durio zibethinus NW_019168015.1 1 CH_dzi_61 5 12 0.00000000268564
Erigeron canadensis Conyza_canadensis_scaffold:3 1 CH_eca_180 3 3 0.000000863818
Erigeron canadensis Conyza_canadensis_scaffold:7 1 CH_eca_181 3 3 0.000000863818
Eucalyptus grandis Chr04 1 CH_egr_65 8 8 5.60419e-23
Eutrema salsugineum scaffold_1 1 CH_esa_39 5 5 0.00000000000216131
Fragaria x ananassa Fvb3-3 1 CH_fan_196 3 4 0.00000118123
Fragaria vesca Fvb3 1 CH_fve_66 4 4 0.00000000012881
Gossypium hirsutum D05 1 CH_ghi_389 3 3 0.00000530459
Glycine max Gm09 1 CH_gma_242 3 3 0.00000246353
Gossypium raimondii Chr09 1 CH_gra_202 3 3 0.00000663936
Gossypium raimondii Chr07 1 CH_gra_222 4 22 0.0000245533
Helianthus annuus HanXRQChr01 1 CH_han_465 3 8 0.0000701719
Lupinus albus Lalb_Chr11 1 CH_lal_231 3 4 0.000108097
Lupinus albus Lalb_Chr02 1 CH_lal_74 4 4 0.0000000227089
Lotus japonicus chr1 1 CH_lja_73 4 4 0.000000000784392
Lonicera japonica GWHAAZE00000004 1 CH_lonja_205 5 33 0.000000140407
Lactuca sativa Lsat_1_v8_lg_1 1 CH_lsa_152 5 31 0.0000000177101
Lactuca sativa Lsat_1_v8_lg_1 1 CH_lsa_236 3 3 0.00000144258
Magnolia biondii Chr06 1 CH_mbi_119 4 5 0.0000000102809
Magnolia biondii Chr04 1 CH_mbi_248 3 3 0.00000470565
Magnolia biondii Chr06 1 CH_mbi_3 10 11 4.13592e-29
Malus domestica Chr10 1 CH_mdo_64 5 6 0.000000000000406432
Manihot esculenta Chromosome10 1 CH_mes_118 4 4 0.00000000093246
Olea europaea chr18 1 CH_oeu_137 3 9 0.0000301313
Oryza sativa ssp. japonica chr04 1 CH_osa_153 3 4 0.000003681
Petunia axillaris Peaxi162Scf00139 1 CH_pax_165 3 4 0.0000338422
Punica granatum NC_045130.1 1 CH_pgr_21 6 9 0.00000000000000771148
Prunus persica Pp04 1 CH_ppe_224 3 3 0.00000137729
Papaver somniferum NC_039358.1 1 CH_pso_28 10 27 1.88471e-19
Papaver somniferum NC_039363.1 1 CH_pso_66 8 26 0.000000000000050894
Quercus lobata 5 1 CH_qlo_107 7 13 4.35691e-16
Quercus lobata 9 1 CH_qlo_557 3 3 0.00000615756
Quercus lobata 4 1 CH_qlo_563 5 59 0.00000687944
Rhododendron simsii chr07 1 CH_rsi_4 15 25 8.79252e-41
Striga asiatica scaffold5 1 CH_sas_4 4 4 0.000000000154097
Salvia bowleyana GWHASIU00000003 1 CH_sbo_212 3 4 0.00000355163
Salvia bowleyana GWHASIU00000004 1 CH_sbo_265 4 48 0.0000389911
Sechium edule LG04 1 CH_sed_117 3 3 0.00000125974
Sequoiadendron giganteum chr4 1 CH_sgi_282 5 7 0.0000000000233451
Sequoiadendron giganteum chr1 1 CH_sgi_92 8 11 1.08162e-20
Solanum lycopersicum SL4.0ch10 1 CH_sly_254 3 3 0.0000169292
Solanum lycopersicum SL4.0ch02 1 CH_sly_50 6 7 0.0000000000000413207
Schrenkiella parvula ch1-1 1 CH_spa_135 3 3 0.00000758792
Schrenkiella parvula ch7-4 1 CH_spa_37 5 5 0.00000000000246997
Solanum pennellii Spenn-ch02 1 CH_spe_32 6 8 8.78119e-16
Solanum tuberosum ST4.03ch10 1 CH_stu_302 3 3 0.0000090602
Solanum tuberosum ST4.03ch06 1 CH_stu_303 3 3 0.0000090602
Solanum tuberosum ST4.03ch02 1 CH_stu_86 5 6 0.000000000016483
Selenicereus undatus Scaffold_10417 1 CH_sun_286 2 2 0.000726639
Theobroma cacao Chromosome_6 1 CH_tca_57 6 17 0.00000000000723398
Tripterygium wilfordii NC_052242.1 1 CH_twi_138 3 3 0.00000531507
Tripterygium wilfordii NC_052242.1 1 CH_twi_65 4 4 0.00000000251885
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_3 8 10 5.45876e-21
Vanilla planifolia CM028160.1 1 CH_vpl_12 6 11 0.000000000000183067
Aethionema arabicum LG-6 2 CH_aar_100 3 3 0.00000357089
Acer truncatum chr13 2 CH_acertr_167 3 3 0.00000062622
Arabidopsis lyrata scaffold_6 2 CH_aly_191 3 3 0.00000869167
Arabidopsis lyrata scaffold_7 2 CH_aly_39 5 6 0.0000000000173751
Arabidopsis lyrata scaffold_2 2 CH_aly_432 3 9 0.000728007
Avicennia marina ScioBoG_3703_HRSCAF_3719 2 CH_ama_38 3 5 0.00000624243
Aquilegia oxysepala CHR06 2 CH_aox_20 5 5 0.00000000000135557
Aquilegia oxysepala CHR06 2 CH_aox_48 4 5 0.0000000140778
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.14 2 CH_arhy_175 4 5 0.0000000035635
Arabidopsis thaliana Chr4 2 CH_ath_19 6 8 6.59635e-16
Arabidopsis thaliana Chr1 2 CH_ath_190 3 4 0.00000654853
Amborella trichopoda AmTr_v1.0_scaffold00135 2 CH_atr_49 4 6 0.000000000789487
Brassica carinata ChrC07 2 CH_bca_169 4 4 0.00000000793358
Brassica carinata ChrB03 2 CH_bca_498 3 3 0.0000151481
Brassica carinata ChrC08 2 CH_bca_596 3 4 0.000060568
Brassica carinata ChrB04 2 CH_bca_597 3 4 0.000060568
Brassica rapa A08 2 CH_bra_71 4 5 0.0000000126082
Beta vulgaris Scaffold_0014 2 CH_bvu_131 3 5 0.00000863306
Cannabis sativa NC_044378.1 2 CH_cansat_10 8 9 4.48351e-23
Capsicum annuum PGAv.1.6.scaffold257 2 CH_can_34 6 8 0.0000000000000121279
Citrus clementina scaffold_2 2 CH_ccl_173 3 3 0.000000565268
Ceratophyllum demersum 4 2 CH_cde_13 4 4 0.000000000487788
Ceratophyllum demersum 6 2 CH_cde_47 3 3 0.00000154391
Carpinus fangiana Cfa01 2 CH_cfa_62 4 4 0.000000000164219
Cardamine hirsuta Chr7 2 CH_chi_100 4 4 0.0000000202866
Cardamine hirsuta Chr4 2 CH_chi_37 6 6 0.0000000000000133785
Carya illinoinensis Chr07 2 CH_cil_245 3 3 0.000000691558
Citrullus lanatus CG_Chr03 2 CH_cla_68 3 3 0.000000991629
Cucumis melo chr12 2 CH_cme_110 3 3 0.000000801094
Carica papaya supercontig_14 2 CH_cpa_26 4 4 0.00000000613531
Carica papaya supercontig_36 2 CH_cpa_4 6 6 0.0000000000000021632
Carica papaya supercontig_77 2 CH_cpa_43 4 5 0.0000000306599
Capsella rubella scaffold_7 2 CH_cru_22 6 6 0.00000000000000182293
Cucumis sativus L. chr1 2 CH_csa_137 3 3 0.00000125433
Daucus carota DCARv2_Chr1 2 CH_dca_167 3 3 0.00000414906
Daucus carota DCARv2_Chr6 2 CH_dca_168 3 3 0.00000414906
Davidia involucrata GWHABJS00000020 2 CH_din_185 3 4 0.00000330109
Durio zibethinus NW_019167982.1 2 CH_dzi_11 8 19 3.38556e-17
Durio zibethinus NW_019167949.1 2 CH_dzi_254 3 6 0.000210842
Durio zibethinus NW_019168015.1 2 CH_dzi_61 5 12 0.00000000268564
Erigeron canadensis Conyza_canadensis_scaffold:3 2 CH_eca_180 3 3 0.000000863818
Erigeron canadensis Conyza_canadensis_scaffold:7 2 CH_eca_181 3 3 0.000000863818
Eucalyptus grandis Chr06 2 CH_egr_325 4 4 0.00000000233143
Eucalyptus grandis Chr04 2 CH_egr_65 8 8 5.60419e-23
Eutrema salsugineum scaffold_1 2 CH_esa_39 5 5 0.00000000000216131
Fragaria x ananassa Fvb3-3 2 CH_fan_196 3 4 0.00000118123
Fragaria vesca Fvb3 2 CH_fve_66 4 4 0.00000000012881
Gossypium hirsutum D05 2 CH_ghi_389 3 3 0.00000530459
Glycine max Gm09 2 CH_gma_242 3 3 0.00000246353
Gossypium raimondii Chr09 2 CH_gra_202 3 3 0.00000663936
Gossypium raimondii Chr07 2 CH_gra_222 4 22 0.0000245533
Helianthus annuus HanXRQChr01 2 CH_han_465 3 8 0.0000701719
Lupinus albus Lalb_Chr11 2 CH_lal_231 3 4 0.000108097
Lupinus albus Lalb_Chr02 2 CH_lal_74 4 4 0.0000000227089
Lotus japonicus chr1 2 CH_lja_73 4 4 0.000000000784392
Lonicera japonica GWHAAZE00000004 2 CH_lonja_205 5 33 0.000000140407
Lactuca sativa Lsat_1_v8_lg_1 2 CH_lsa_152 5 31 0.0000000177101
Lactuca sativa Lsat_1_v8_lg_1 2 CH_lsa_236 3 3 0.00000144258
Magnolia biondii Chr06 2 CH_mbi_119 4 5 0.0000000102809
Magnolia biondii Chr04 2 CH_mbi_248 3 3 0.00000470565
Magnolia biondii Chr06 2 CH_mbi_3 10 11 4.13592e-29
Malus domestica Chr10 2 CH_mdo_64 5 6 0.000000000000406432
Manihot esculenta Chromosome10 2 CH_mes_118 4 4 0.00000000093246
Olea europaea chr18 2 CH_oeu_137 3 9 0.0000301313
Oryza sativa ssp. japonica chr04 2 CH_osa_153 3 4 0.000003681
Petunia axillaris Peaxi162Scf00139 2 CH_pax_165 3 4 0.0000338422
Punica granatum NC_045130.1 2 CH_pgr_21 6 9 0.00000000000000771148
Prunus persica Pp04 2 CH_ppe_224 3 3 0.00000137729
Papaver somniferum NC_039358.1 2 CH_pso_28 10 27 1.88471e-19
Papaver somniferum NC_039363.1 2 CH_pso_66 8 26 0.000000000000050894
Quercus lobata 5 2 CH_qlo_107 7 13 4.35691e-16
Quercus lobata 9 2 CH_qlo_557 3 3 0.00000615756
Quercus lobata 4 2 CH_qlo_563 5 59 0.00000687944
Rhododendron simsii chr07 2 CH_rsi_4 15 25 8.79252e-41
Striga asiatica scaffold5 2 CH_sas_4 4 4 0.000000000154097
Salvia bowleyana GWHASIU00000003 2 CH_sbo_212 3 4 0.00000355163
Salvia bowleyana GWHASIU00000004 2 CH_sbo_265 4 48 0.0000389911
Sechium edule LG04 2 CH_sed_117 3 3 0.00000125974
Sequoiadendron giganteum chr4 2 CH_sgi_282 5 7 0.0000000000233451
Sequoiadendron giganteum chr1 2 CH_sgi_92 8 11 1.08162e-20
Solanum lycopersicum SL4.0ch10 2 CH_sly_254 3 3 0.0000169292
Solanum lycopersicum SL4.0ch02 2 CH_sly_50 6 7 0.0000000000000413207
Schrenkiella parvula ch1-1 2 CH_spa_135 3 3 0.00000758792
Schrenkiella parvula ch7-4 2 CH_spa_37 5 5 0.00000000000246997
Solanum pennellii Spenn-ch02 2 CH_spe_32 6 8 8.78119e-16
Solanum tuberosum ST4.03ch10 2 CH_stu_302 3 3 0.0000090602
Solanum tuberosum ST4.03ch06 2 CH_stu_303 3 3 0.0000090602
Solanum tuberosum ST4.03ch02 2 CH_stu_86 5 6 0.000000000016483
Selenicereus undatus Scaffold_10417 2 CH_sun_286 2 2 0.000726639
Theobroma cacao Chromosome_6 2 CH_tca_57 6 17 0.00000000000723398
Tripterygium wilfordii NC_052242.1 2 CH_twi_138 3 3 0.00000531507
Tripterygium wilfordii NC_052242.1 2 CH_twi_65 4 4 0.00000000251885
Vaccinium macrocarpon chr12_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_3 8 10 5.45876e-21
Vanilla planifolia CM028160.1 2 CH_vpl_12 6 11 0.000000000000183067

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001