Functional clusters
Information
- Type MapMan
- Description Solute transport.channels.CorA family.metal cation transporter (MRS/MGT)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amborella trichopoda | AmTr_v1.0_scaffold00017 | 1 | CH_atr_127 | 3 | 3 | 0.00000270745 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 1 | CH_atr_75 | 4 | 7 | 0.0000000376056 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 1 | CH_bvu_58 | 4 | 4 | 0.00000000121743 |
| Camellia sinensis var. sinensis | Chr5 | 1 | CH_camsi_25 | 9 | 18 | 3.76408e-20 |
| Camellia sinensis var. sinensis | Chr13 | 1 | CH_camsi_470 | 3 | 3 | 0.0000156441 |
| Coffea canephora | chr3 | 1 | CH_ccan_26 | 5 | 25 | 0.00000000000025456 |
| Coffea canephora | chr0 | 1 | CH_ccan_91 | 3 | 8 | 0.000000346596 |
| Daucus carota | DCARv2_Chr7 | 1 | CH_dca_81 | 4 | 5 | 0.00000000708045 |
| Fragaria vesca | Fvb2 | 1 | CH_fve_302 | 3 | 11 | 0.000102922 |
| Magnolia biondii | Chr04 | 1 | CH_mbi_10 | 8 | 14 | 1.80956e-21 |
| Medicago truncatula | chr1 | 1 | CH_mtr_308 | 4 | 9 | 0.000000278113 |
| Medicago truncatula | chr1 | 1 | CH_mtr_415 | 3 | 3 | 0.00000512513 |
| Populus trichocarpa | Chr01 | 1 | CH_ptr_281 | 3 | 5 | 0.0000280466 |
| Phaseolus vulgaris | Chr08 | 1 | CH_pvu_434 | 4 | 62 | 0.000466414 |
| Quercus lobata | 11 | 1 | CH_qlo_246 | 4 | 4 | 0.000000000136253 |
| Rhododendron simsii | chr13 | 1 | CH_rsi_271 | 3 | 3 | 0.00000712103 |
| Salvia bowleyana | GWHASIU00000005 | 1 | CH_sbo_49 | 5 | 6 | 0.000000000000248166 |
| Sequoiadendron giganteum | chr11 | 1 | CH_sgi_353 | 4 | 4 | 0.0000000013444 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_432 | 4 | 5 | 0.00000000671987 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_637 | 3 | 3 | 0.00000344948 |
| Sequoiadendron giganteum | chr11 | 1 | CH_sgi_638 | 3 | 3 | 0.00000344948 |
| Trochodendron aralioides | group11 | 1 | CH_tar_48 | 6 | 25 | 0.000000000167375 |
| Trochodendron aralioides | group16 | 1 | CH_tar_95 | 4 | 5 | 0.0000000194202 |
| Theobroma cacao | Chromosome_6 | 1 | CH_tca_193 | 3 | 3 | 0.000000675875 |
| Amborella trichopoda | AmTr_v1.0_scaffold00017 | 2 | CH_atr_127 | 3 | 3 | 0.00000270745 |
| Amborella trichopoda | AmTr_v1.0_scaffold00019 | 2 | CH_atr_75 | 4 | 7 | 0.0000000376056 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 2 | CH_bvu_58 | 4 | 4 | 0.00000000121743 |
| Camellia sinensis var. sinensis | Chr5 | 2 | CH_camsi_25 | 9 | 18 | 3.76408e-20 |
| Camellia sinensis var. sinensis | Chr13 | 2 | CH_camsi_470 | 3 | 3 | 0.0000156441 |
| Coffea canephora | chr3 | 2 | CH_ccan_26 | 5 | 25 | 0.00000000000025456 |
| Coffea canephora | chr0 | 2 | CH_ccan_91 | 3 | 8 | 0.000000346596 |
| Daucus carota | DCARv2_Chr7 | 2 | CH_dca_81 | 4 | 5 | 0.00000000708045 |
| Eucalyptus grandis | Chr10 | 2 | CH_egr_614 | 3 | 4 | 0.0000199086 |
| Fragaria vesca | Fvb2 | 2 | CH_fve_302 | 3 | 11 | 0.000102922 |
| Magnolia biondii | Chr04 | 2 | CH_mbi_10 | 8 | 14 | 1.80956e-21 |
| Populus trichocarpa | Chr01 | 2 | CH_ptr_281 | 3 | 5 | 0.0000280466 |
| Phaseolus vulgaris | Chr08 | 2 | CH_pvu_434 | 4 | 62 | 0.000466414 |
| Quercus lobata | 11 | 2 | CH_qlo_246 | 4 | 4 | 0.000000000136253 |
| Rhododendron simsii | chr13 | 2 | CH_rsi_271 | 3 | 3 | 0.00000712103 |
| Salvia bowleyana | GWHASIU00000005 | 2 | CH_sbo_49 | 5 | 6 | 0.000000000000248166 |
| Sequoiadendron giganteum | chr11 | 2 | CH_sgi_353 | 4 | 4 | 0.0000000013444 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_432 | 4 | 5 | 0.00000000671987 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_637 | 3 | 3 | 0.00000344948 |
| Sequoiadendron giganteum | chr11 | 2 | CH_sgi_638 | 3 | 3 | 0.00000344948 |
| Trochodendron aralioides | group11 | 2 | CH_tar_48 | 6 | 25 | 0.000000000167375 |
| Trochodendron aralioides | group16 | 2 | CH_tar_95 | 4 | 5 | 0.0000000194202 |
| Theobroma cacao | Chromosome_6 | 2 | CH_tca_193 | 3 | 3 | 0.000000675875 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |