Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.choline transporter (CHER/CTL1)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_3 1 CH_aly_249 2 2 0.0000660044
Chara braunii BFEA01000404 1 CH_cbr_124 2 4 0.00043153
Coffea canephora chr5 1 CH_ccan_179 2 4 0.0000255533
Davidia involucrata GWHABJS00000013 1 CH_din_434 2 2 0.000300075
Erigeron canadensis Conyza_canadensis_scaffold:3 1 CH_eca_440 2 3 0.000403835
Lupinus albus Lalb_Chr25 1 CH_lal_380 2 2 0.000524824
Lupinus albus Lalb_Chr19 1 CH_lal_381 2 2 0.000524824
Oryza sativa ssp. japonica chr04 1 CH_osa_301 2 5 0.000316857
Sequoiadendron giganteum chr7 1 CH_sgi_423 3 3 0.00000000355983
Trochodendron aralioides group3 1 CH_tar_386 2 2 0.00018011
Vanilla planifolia CM028160.1 1 CH_vpl_273 2 2 0.000221664
Arabidopsis lyrata scaffold_3 2 CH_aly_249 2 2 0.0000660044
Chara braunii BFEA01000404 2 CH_cbr_124 2 4 0.00043153
Coffea canephora chr5 2 CH_ccan_179 2 4 0.0000255533
Davidia involucrata GWHABJS00000013 2 CH_din_434 2 2 0.000300075
Erigeron canadensis Conyza_canadensis_scaffold:3 2 CH_eca_440 2 3 0.000403835
Lupinus albus Lalb_Chr25 2 CH_lal_380 2 2 0.000524824
Lupinus albus Lalb_Chr19 2 CH_lal_381 2 2 0.000524824
Oryza sativa ssp. japonica chr04 2 CH_osa_301 2 5 0.000316857
Sequoiadendron giganteum chr7 2 CH_sgi_423 3 3 0.00000000355983
Trochodendron aralioides group3 2 CH_tar_386 2 2 0.00018011
Vanilla planifolia CM028160.1 2 CH_vpl_273 2 2 0.000221664

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001