Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.TOC superfamily.transport protein (TSUP)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr1 | 1 | CH_acertr_16 | 6 | 10 | 0.000000000000014109 |
| Acer truncatum | chr7 | 1 | CH_acertr_179 | 3 | 3 | 0.00000213213 |
| Arabidopsis thaliana | Chr4 | 1 | CH_ath_375 | 2 | 2 | 0.000429738 |
| Amborella trichopoda | AmTr_v1.0_scaffold00109 | 1 | CH_atr_303 | 2 | 2 | 0.000476644 |
| Corylus avellana | 3 | 1 | CH_cav_164 | 3 | 4 | 0.00000296211 |
| Chara braunii | BFEA01000209 | 1 | CH_cbr_133 | 2 | 3 | 0.000647303 |
| Carya illinoinensis | Chr02 | 1 | CH_cil_304 | 3 | 4 | 0.0000104854 |
| Citrullus lanatus | CG_Chr11 | 1 | CH_cla_204 | 2 | 2 | 0.000532269 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 1 | CH_eca_401 | 2 | 2 | 0.000269233 |
| Fragaria x ananassa | Fvb6-2 | 1 | CH_fan_649 | 3 | 19 | 0.000879269 |
| Fragaria vesca | Fvb6 | 1 | CH_fve_185 | 4 | 29 | 0.00000101664 |
| Glycine max | Gm05 | 1 | CH_gma_245 | 3 | 3 | 0.00000332793 |
| Glycine max | Gm08 | 1 | CH_gma_246 | 3 | 3 | 0.00000332793 |
| Lotus japonicus | chr4 | 1 | CH_lja_184 | 3 | 3 | 0.00000168747 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 1 | CH_lsa_503 | 2 | 2 | 0.000514007 |
| Malus domestica | Chr09 | 1 | CH_mdo_246 | 3 | 3 | 0.00000061692 |
| Manihot esculenta | Chromosome04 | 1 | CH_mes_209 | 3 | 3 | 0.00000123051 |
| Physcomitrium patens | Chr20 | 1 | CH_ppa_251 | 2 | 2 | 0.000367636 |
| Prunus persica | Pp03 | 1 | CH_ppe_115 | 6 | 39 | 0.000000000288577 |
| Papaver somniferum | NC_039365.1 | 1 | CH_pso_46 | 8 | 52 | 0.00000000000000108009 |
| Papaver somniferum | NC_039367.1 | 1 | CH_pso_53 | 8 | 58 | 0.00000000000000481061 |
| Populus trichocarpa | Chr01 | 1 | CH_ptr_290 | 3 | 8 | 0.0000462588 |
| Phaseolus vulgaris | Chr02 | 1 | CH_pvu_61 | 5 | 7 | 0.0000000000137765 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 1 | CH_rch_221 | 5 | 50 | 0.0000000100684 |
| Sequoiadendron giganteum | chr10 | 1 | CH_sgi_488 | 3 | 3 | 0.0000000355983 |
| Sapria himalayana | scaffold50_4036370 | 1 | CH_shi_185 | 2 | 2 | 0.000171541 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 1 | CH_tpr_128 | 3 | 3 | 0.000000722019 |
| Acer truncatum | chr1 | 2 | CH_acertr_16 | 6 | 10 | 0.000000000000014109 |
| Acer truncatum | chr7 | 2 | CH_acertr_179 | 3 | 3 | 0.00000213213 |
| Arabidopsis thaliana | Chr4 | 2 | CH_ath_375 | 2 | 2 | 0.000429738 |
| Amborella trichopoda | AmTr_v1.0_scaffold00109 | 2 | CH_atr_303 | 2 | 2 | 0.000476644 |
| Corylus avellana | 3 | 2 | CH_cav_164 | 3 | 4 | 0.00000296211 |
| Chara braunii | BFEA01000209 | 2 | CH_cbr_133 | 2 | 3 | 0.000647303 |
| Carya illinoinensis | Chr02 | 2 | CH_cil_304 | 3 | 4 | 0.0000104854 |
| Citrullus lanatus | CG_Chr11 | 2 | CH_cla_204 | 2 | 2 | 0.000532269 |
| Erigeron canadensis | Conyza_canadensis_scaffold:9 | 2 | CH_eca_401 | 2 | 2 | 0.000269233 |
| Fragaria x ananassa | Fvb6-2 | 2 | CH_fan_649 | 3 | 19 | 0.000879269 |
| Fragaria vesca | Fvb6 | 2 | CH_fve_185 | 4 | 29 | 0.00000101664 |
| Glycine max | Gm05 | 2 | CH_gma_245 | 3 | 3 | 0.00000332793 |
| Glycine max | Gm08 | 2 | CH_gma_246 | 3 | 3 | 0.00000332793 |
| Lotus japonicus | chr4 | 2 | CH_lja_184 | 3 | 3 | 0.00000168747 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 2 | CH_lsa_503 | 2 | 2 | 0.000514007 |
| Malus domestica | Chr09 | 2 | CH_mdo_246 | 3 | 3 | 0.00000061692 |
| Manihot esculenta | Chromosome04 | 2 | CH_mes_209 | 3 | 3 | 0.00000123051 |
| Physcomitrium patens | Chr20 | 2 | CH_ppa_251 | 2 | 2 | 0.000367636 |
| Prunus persica | Pp03 | 2 | CH_ppe_115 | 6 | 39 | 0.000000000288577 |
| Papaver somniferum | NC_039365.1 | 2 | CH_pso_46 | 8 | 52 | 0.00000000000000108009 |
| Papaver somniferum | NC_039367.1 | 2 | CH_pso_53 | 8 | 58 | 0.00000000000000481061 |
| Populus trichocarpa | Chr01 | 2 | CH_ptr_290 | 3 | 8 | 0.0000462588 |
| Phaseolus vulgaris | Chr02 | 2 | CH_pvu_61 | 5 | 7 | 0.0000000000137765 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 2 | CH_rch_221 | 5 | 50 | 0.0000000100684 |
| Sequoiadendron giganteum | chr10 | 2 | CH_sgi_488 | 3 | 3 | 0.0000000355983 |
| Sapria himalayana | scaffold50_4036370 | 2 | CH_shi_185 | 2 | 2 | 0.000171541 |
| Trifolium pratense | Tp57577_TGAC_v2_LG2 | 2 | CH_tpr_128 | 3 | 3 | 0.000000722019 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |