Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.ZIP family.metal cation transporter (ZIP)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group23 | 1 | CH_ach_72 | 4 | 47 | 0.0000178917 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 1 | CH_amhyb_62 | 3 | 3 | 0.00000127543 |
| Amborella trichopoda | AmTr_v1.0_scaffold00062 | 1 | CH_atr_126 | 3 | 3 | 0.00000270745 |
| Amborella trichopoda | AmTr_v1.0_scaffold00032 | 1 | CH_atr_60 | 4 | 5 | 0.00000000537573 |
| Brassica carinata | ChrC09 | 1 | CH_bca_83 | 5 | 7 | 0.000000000094298 |
| Brassica napus | C01 | 1 | CH_bna_118 | 5 | 11 | 0.00000000187593 |
| Brassica napus | A01 | 1 | CH_bna_27 | 6 | 7 | 0.0000000000000140031 |
| Brassica napus | A03 | 1 | CH_bna_398 | 3 | 3 | 0.0000159292 |
| Brassica oleracea | C1 | 1 | CH_bol_35 | 5 | 6 | 0.0000000000103407 |
| Brassica rapa | A03 | 1 | CH_bra_149 | 3 | 3 | 0.00000635884 |
| Camellia sinensis var. sinensis | Chr13 | 1 | CH_camsi_441 | 3 | 5 | 0.00000901709 |
| Camellia sinensis var. sinensis | Chr8 | 1 | CH_camsi_564 | 4 | 51 | 0.0000512314 |
| Corylus avellana | 4 | 1 | CH_cav_115 | 4 | 7 | 0.000000183164 |
| Carica papaya | supercontig_8 | 1 | CH_cpa_116 | 3 | 5 | 0.0000113819 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3333 | 1 | CH_cqu_130 | 4 | 5 | 0.000000023846 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3514 | 1 | CH_cqu_66 | 5 | 7 | 0.0000000000521812 |
| Eucalyptus grandis | Chr11 | 1 | CH_egr_211 | 5 | 5 | 0.00000000000102348 |
| Erythranthe guttata | scaffold_11 | 1 | CH_egut_200 | 5 | 33 | 0.000000765346 |
| Erythranthe guttata | scaffold_13 | 1 | CH_egut_232 | 3 | 3 | 0.0000090667 |
| Eutrema salsugineum | scaffold_20 | 1 | CH_esa_127 | 3 | 3 | 0.000007098 |
| Gossypium hirsutum | D10 | 1 | CH_ghi_228 | 5 | 22 | 0.0000000747163 |
| Gossypium hirsutum | D08 | 1 | CH_ghi_444 | 3 | 4 | 0.0000455844 |
| Helianthus annuus | HanXRQChr15 | 1 | CH_han_404 | 3 | 5 | 0.0000297746 |
| Hydrangea macrophylla | Hma1.2p1_0092F.1 | 1 | CH_hma_78 | 3 | 3 | 0.00000407249 |
| Lupinus albus | Lalb_Chr02 | 1 | CH_lal_148 | 4 | 23 | 0.00000908852 |
| Lonicera japonica | GWHAAZE00000002 | 1 | CH_lonja_159 | 4 | 5 | 0.00000000766594 |
| Manihot esculenta | Chromosome16 | 1 | CH_mes_269 | 4 | 40 | 0.000044237 |
| Medicago truncatula | chr3 | 1 | CH_mtr_165 | 5 | 11 | 0.00000000015285 |
| Nelumbo nucifera | chr7 | 1 | CH_nnu_78 | 4 | 7 | 0.0000000118734 |
| Petunia axillaris | Peaxi162Scf00623 | 1 | CH_pax_77 | 4 | 7 | 0.0000000498672 |
| Punica granatum | NC_045127.1 | 1 | CH_pgr_111 | 4 | 10 | 0.000000131545 |
| Pisum sativum | chr5LG3 | 1 | CH_psa_12 | 6 | 6 | 6.9607e-17 |
| Papaver somniferum | NC_039358.1 | 1 | CH_pso_284 | 5 | 58 | 0.000000464989 |
| Papaver somniferum | NC_039358.1 | 1 | CH_pso_83 | 5 | 6 | 0.000000000000615208 |
| Populus trichocarpa | Chr06 | 1 | CH_ptr_265 | 3 | 4 | 0.0000112221 |
| Quercus lobata | 4 | 1 | CH_qlo_326 | 4 | 4 | 0.00000000522305 |
| Quercus lobata | 1 | 1 | CH_qlo_572 | 3 | 3 | 0.00000919636 |
| Quercus lobata | 11 | 1 | CH_qlo_623 | 3 | 4 | 0.0000367688 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_512 | 3 | 7 | 0.0000566849 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_742 | 3 | 13 | 0.00046256 |
| Salvia bowleyana | GWHASIU00000005 | 1 | CH_sbo_191 | 3 | 3 | 0.00000113028 |
| Salvia bowleyana | GWHASIU00000005 | 1 | CH_sbo_192 | 3 | 3 | 0.00000113028 |
| Salix brachista | GWHAAZH00000010 | 1 | CH_sbr_75 | 4 | 4 | 0.00000000178669 |
| Simmondsia chinensis | GWHAASQ00000015 | 1 | CH_sci_122 | 3 | 6 | 0.0000477998 |
| Solanum lycopersicum | SL4.0ch02 | 1 | CH_sly_207 | 3 | 3 | 0.00000147795 |
| Schrenkiella parvula | ch2-4 | 1 | CH_spa_141 | 3 | 3 | 0.0000143203 |
| Schrenkiella parvula | ch1-1 | 1 | CH_spa_142 | 3 | 3 | 0.0000143203 |
| Schrenkiella parvula | ch7-4 | 1 | CH_spa_70 | 4 | 4 | 0.0000000107121 |
| Solanum pennellii | Spenn-ch02 | 1 | CH_spe_46 | 5 | 6 | 0.00000000000052888 |
| Solanum tuberosum | ST4.03ch07 | 1 | CH_stu_309 | 3 | 4 | 0.0000128536 |
| Solanum tuberosum | ST4.03ch02 | 1 | CH_stu_78 | 5 | 6 | 0.00000000000265853 |
| Theobroma cacao | Chromosome_1 | 1 | CH_tca_372 | 4 | 53 | 0.000339948 |
| Utricularia gibba | unitig_21 | 1 | CH_ugi_9 | 5 | 5 | 0.000000000000100921 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_164 | 3 | 3 | 0.00000471484 |
| Vigna mungo | CM024078.1 | 1 | CH_vmu_244 | 3 | 7 | 0.0000996042 |
| Vitis vinifera | chr10 | 1 | CH_vvi_222 | 3 | 3 | 0.00000486007 |
| Vitis vinifera | chr19 | 1 | CH_vvi_303 | 3 | 7 | 0.000169824 |
| Actinidia chinensis | Lachesis_group23 | 2 | CH_ach_72 | 4 | 47 | 0.0000178917 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_1 | 2 | CH_amhyb_62 | 3 | 3 | 0.00000127543 |
| Amborella trichopoda | AmTr_v1.0_scaffold00062 | 2 | CH_atr_126 | 3 | 3 | 0.00000270745 |
| Amborella trichopoda | AmTr_v1.0_scaffold00032 | 2 | CH_atr_60 | 4 | 5 | 0.00000000537573 |
| Brassica carinata | ChrC09 | 2 | CH_bca_83 | 5 | 7 | 0.000000000094298 |
| Brassica oleracea | C1 | 2 | CH_bol_35 | 5 | 6 | 0.0000000000103407 |
| Brassica rapa | A03 | 2 | CH_bra_149 | 3 | 3 | 0.00000635884 |
| Camellia sinensis var. sinensis | Chr13 | 2 | CH_camsi_441 | 3 | 5 | 0.00000901709 |
| Camellia sinensis var. sinensis | Chr8 | 2 | CH_camsi_564 | 4 | 51 | 0.0000512314 |
| Corylus avellana | 4 | 2 | CH_cav_115 | 4 | 7 | 0.000000183164 |
| Carica papaya | supercontig_8 | 2 | CH_cpa_116 | 3 | 5 | 0.0000113819 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3333 | 2 | CH_cqu_130 | 4 | 5 | 0.000000023846 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3514 | 2 | CH_cqu_66 | 5 | 7 | 0.0000000000521812 |
| Eucalyptus grandis | Chr11 | 2 | CH_egr_211 | 5 | 5 | 0.00000000000102348 |
| Eucalyptus grandis | Chr05 | 2 | CH_egr_504 | 4 | 11 | 0.000000767324 |
| Eucalyptus grandis | Chr01 | 2 | CH_egr_725 | 3 | 6 | 0.0000994675 |
| Erythranthe guttata | scaffold_11 | 2 | CH_egut_200 | 5 | 33 | 0.000000765346 |
| Erythranthe guttata | scaffold_13 | 2 | CH_egut_232 | 3 | 3 | 0.0000090667 |
| Eutrema salsugineum | scaffold_20 | 2 | CH_esa_127 | 3 | 3 | 0.000007098 |
| Gossypium hirsutum | D10 | 2 | CH_ghi_228 | 5 | 22 | 0.0000000747163 |
| Gossypium hirsutum | D08 | 2 | CH_ghi_444 | 3 | 4 | 0.0000455844 |
| Helianthus annuus | HanXRQChr15 | 2 | CH_han_404 | 3 | 5 | 0.0000297746 |
| Hydrangea macrophylla | Hma1.2p1_0092F.1 | 2 | CH_hma_78 | 3 | 3 | 0.00000407249 |
| Lupinus albus | Lalb_Chr02 | 2 | CH_lal_148 | 4 | 23 | 0.00000908852 |
| Lonicera japonica | GWHAAZE00000002 | 2 | CH_lonja_159 | 4 | 5 | 0.00000000766594 |
| Manihot esculenta | Chromosome16 | 2 | CH_mes_269 | 4 | 40 | 0.000044237 |
| Nelumbo nucifera | chr7 | 2 | CH_nnu_78 | 4 | 7 | 0.0000000118734 |
| Petunia axillaris | Peaxi162Scf00623 | 2 | CH_pax_77 | 4 | 7 | 0.0000000498672 |
| Punica granatum | NC_045127.1 | 2 | CH_pgr_111 | 4 | 10 | 0.000000131545 |
| Pisum sativum | chr5LG3 | 2 | CH_psa_12 | 6 | 6 | 6.9607e-17 |
| Papaver somniferum | NC_039358.1 | 2 | CH_pso_284 | 5 | 58 | 0.000000464989 |
| Papaver somniferum | NC_039358.1 | 2 | CH_pso_83 | 5 | 6 | 0.000000000000615208 |
| Populus trichocarpa | Chr06 | 2 | CH_ptr_265 | 3 | 4 | 0.0000112221 |
| Quercus lobata | 4 | 2 | CH_qlo_326 | 4 | 4 | 0.00000000522305 |
| Quercus lobata | 1 | 2 | CH_qlo_572 | 3 | 3 | 0.00000919636 |
| Quercus lobata | 11 | 2 | CH_qlo_623 | 3 | 4 | 0.0000367688 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_512 | 3 | 7 | 0.0000566849 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_742 | 3 | 13 | 0.00046256 |
| Salvia bowleyana | GWHASIU00000005 | 2 | CH_sbo_191 | 3 | 3 | 0.00000113028 |
| Salvia bowleyana | GWHASIU00000005 | 2 | CH_sbo_192 | 3 | 3 | 0.00000113028 |
| Salix brachista | GWHAAZH00000010 | 2 | CH_sbr_75 | 4 | 4 | 0.00000000178669 |
| Simmondsia chinensis | GWHAASQ00000015 | 2 | CH_sci_122 | 3 | 6 | 0.0000477998 |
| Solanum lycopersicum | SL4.0ch02 | 2 | CH_sly_207 | 3 | 3 | 0.00000147795 |
| Schrenkiella parvula | ch2-4 | 2 | CH_spa_141 | 3 | 3 | 0.0000143203 |
| Schrenkiella parvula | ch1-1 | 2 | CH_spa_142 | 3 | 3 | 0.0000143203 |
| Schrenkiella parvula | ch7-4 | 2 | CH_spa_70 | 4 | 4 | 0.0000000107121 |
| Solanum pennellii | Spenn-ch02 | 2 | CH_spe_46 | 5 | 6 | 0.00000000000052888 |
| Solanum tuberosum | ST4.03ch07 | 2 | CH_stu_309 | 3 | 4 | 0.0000128536 |
| Solanum tuberosum | ST4.03ch02 | 2 | CH_stu_78 | 5 | 6 | 0.00000000000265853 |
| Theobroma cacao | Chromosome_1 | 2 | CH_tca_372 | 4 | 53 | 0.000339948 |
| Utricularia gibba | unitig_21 | 2 | CH_ugi_9 | 5 | 5 | 0.000000000000100921 |
| Vaccinium macrocarpon | chr9_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_164 | 3 | 3 | 0.00000471484 |
| Vigna mungo | CM024078.1 | 2 | CH_vmu_244 | 3 | 7 | 0.0000996042 |
| Vitis vinifera | chr10 | 2 | CH_vvi_222 | 3 | 3 | 0.00000486007 |
| Vitis vinifera | chr19 | 2 | CH_vvi_303 | 3 | 7 | 0.000169824 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |