Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.DMT superfamily.solute transporter (TPPT)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_5 | 1 | CH_aly_324 | 2 | 2 | 0.000198013 |
| Aquilegia oxysepala | CHR04 | 1 | CH_aox_80 | 3 | 3 | 0.000000337686 |
| Arabidopsis thaliana | Chr3 | 1 | CH_ath_31 | 4 | 4 | 0.0000000000010582 |
| Brassica napus | C06 | 1 | CH_bna_429 | 3 | 10 | 0.0000281685 |
| Citrus clementina | scaffold_6 | 1 | CH_ccl_157 | 3 | 3 | 0.000000353292 |
| Cardamine hirsuta | Chr5 | 1 | CH_chi_61 | 4 | 4 | 0.000000000014862 |
| Citrullus lanatus | CG_Chr06 | 1 | CH_cla_19 | 4 | 4 | 0.000000000439883 |
| Cucumis melo | chr02 | 1 | CH_cme_147 | 3 | 9 | 0.0000313731 |
| Capsella rubella | scaffold_5 | 1 | CH_cru_132 | 3 | 3 | 0.000000080191 |
| Cucumis sativus L. | chr1 | 1 | CH_csa_152 | 3 | 5 | 0.00000585124 |
| Eutrema salsugineum | scaffold_19 | 1 | CH_esa_284 | 2 | 2 | 0.000456899 |
| Helianthus annuus | HanXRQChr11 | 1 | CH_han_363 | 3 | 7 | 0.00000940324 |
| Magnolia biondii | Chr10 | 1 | CH_mbi_611 | 2 | 2 | 0.000485661 |
| Papaver somniferum | NC_039366.1 | 1 | CH_pso_365 | 3 | 8 | 0.0000121816 |
| Sequoiadendron giganteum | chr9 | 1 | CH_sgi_1328 | 2 | 2 | 0.000487151 |
| Solanum lycopersicum | SL4.0ch09 | 1 | CH_sly_525 | 2 | 2 | 0.000586941 |
| Solanum pennellii | Spenn-ch09 | 1 | CH_spe_484 | 2 | 2 | 0.00044479 |
| Solanum tuberosum | ST4.03ch09 | 1 | CH_stu_569 | 2 | 2 | 0.000512453 |
| Vitis vinifera | chr8 | 1 | CH_vvi_178 | 3 | 3 | 0.000000486007 |
| Arabidopsis lyrata | scaffold_5 | 2 | CH_aly_324 | 2 | 2 | 0.000198013 |
| Aquilegia oxysepala | CHR04 | 2 | CH_aox_80 | 3 | 3 | 0.000000337686 |
| Arabidopsis thaliana | Chr3 | 2 | CH_ath_31 | 4 | 4 | 0.0000000000010582 |
| Citrus clementina | scaffold_6 | 2 | CH_ccl_157 | 3 | 3 | 0.000000353292 |
| Cardamine hirsuta | Chr5 | 2 | CH_chi_61 | 4 | 4 | 0.000000000014862 |
| Citrullus lanatus | CG_Chr06 | 2 | CH_cla_19 | 4 | 4 | 0.000000000439883 |
| Cucumis melo | chr02 | 2 | CH_cme_147 | 3 | 9 | 0.0000313731 |
| Capsella rubella | scaffold_5 | 2 | CH_cru_132 | 3 | 3 | 0.000000080191 |
| Cucumis sativus L. | chr1 | 2 | CH_csa_152 | 3 | 5 | 0.00000585124 |
| Eutrema salsugineum | scaffold_19 | 2 | CH_esa_284 | 2 | 2 | 0.000456899 |
| Helianthus annuus | HanXRQChr11 | 2 | CH_han_363 | 3 | 7 | 0.00000940324 |
| Magnolia biondii | Chr10 | 2 | CH_mbi_611 | 2 | 2 | 0.000485661 |
| Papaver somniferum | NC_039366.1 | 2 | CH_pso_365 | 3 | 8 | 0.0000121816 |
| Sequoiadendron giganteum | chr9 | 2 | CH_sgi_1328 | 2 | 2 | 0.000487151 |
| Solanum lycopersicum | SL4.0ch09 | 2 | CH_sly_525 | 2 | 2 | 0.000586941 |
| Solanum pennellii | Spenn-ch09 | 2 | CH_spe_484 | 2 | 2 | 0.00044479 |
| Solanum tuberosum | ST4.03ch09 | 2 | CH_stu_569 | 2 | 2 | 0.000512453 |
| Vitis vinifera | chr8 | 2 | CH_vvi_178 | 3 | 3 | 0.000000486007 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |