Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.APC superfamily.AAAP family.proline transporter (ProT)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amborella trichopoda AmTr_v1.0_scaffold00166 1 CH_atr_316 2 3 0.000714919
Brassica oleracea C4 1 CH_bol_382 2 2 0.000490292
Brassica rapa A05 1 CH_bra_357 2 2 0.00064397
Capsicum annuum PGAv.1.6.scaffold503 1 CH_can_274 2 2 0.0000826105
Cicer arietinum L. Ca_LG6_v3 1 CH_car_270 2 2 0.000466981
Citrus clementina scaffold_3 1 CH_ccl_391 2 2 0.000246093
Carpinus fangiana Cfa08 1 CH_cfa_299 2 2 0.000227204
Cucumis melo chr10 1 CH_cme_293 2 5 0.000667045
Daucus carota DCARv2_Chr7 1 CH_dca_305 2 2 0.000191333
Fragaria vesca Fvb5 1 CH_fve_344 2 2 0.00017673
Helianthus annuus HanXRQChr08 1 CH_han_691 2 2 0.000579643
Hydrangea macrophylla Hma1.2p1_0710F.1 1 CH_hma_390 2 2 0.000666519
Nicotiana tabacum Nitab4.5_0000278 1 CH_nta_129 2 3 0.000329164
Petunia axillaris Peaxi162Scf00951 1 CH_pax_351 2 2 0.000703556
Punica granatum NC_045128.1 1 CH_pgr_117 3 6 0.000000168898
Quercus lobata 10 1 CH_qlo_380 3 5 0.0000000399821
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_588 2 2 0.000119596
Solanum lycopersicum SL4.0ch05 1 CH_sly_477 2 2 0.000352164
Schrenkiella parvula ch4-6 1 CH_spa_218 2 2 0.000236202
Solanum pennellii Spenn-ch05 1 CH_spe_434 2 2 0.000266874
Solanum pennellii Spenn-ch03 1 CH_spe_531 2 3 0.000800581
Solanum tuberosum ST4.03ch03 1 CH_stu_512 2 2 0.000307472
Solanum tuberosum ST4.03ch05 1 CH_stu_513 2 2 0.000307472
Selenicereus undatus Scaffold_33675 1 CH_sun_239 2 2 0.000435983
Trochodendron aralioides group12 1 CH_tar_146 3 4 0.000000216254
Amborella trichopoda AmTr_v1.0_scaffold00166 2 CH_atr_316 2 3 0.000714919
Brassica oleracea C4 2 CH_bol_382 2 2 0.000490292
Brassica rapa A05 2 CH_bra_357 2 2 0.00064397
Capsicum annuum PGAv.1.6.scaffold503 2 CH_can_274 2 2 0.0000826105
Cicer arietinum L. Ca_LG6_v3 2 CH_car_270 2 2 0.000466981
Citrus clementina scaffold_3 2 CH_ccl_391 2 2 0.000246093
Carpinus fangiana Cfa08 2 CH_cfa_299 2 2 0.000227204
Cucumis melo chr10 2 CH_cme_293 2 5 0.000667045
Daucus carota DCARv2_Chr7 2 CH_dca_305 2 2 0.000191333
Fragaria vesca Fvb5 2 CH_fve_344 2 2 0.00017673
Helianthus annuus HanXRQChr08 2 CH_han_691 2 2 0.000579643
Hydrangea macrophylla Hma1.2p1_0710F.1 2 CH_hma_390 2 2 0.000666519
Nicotiana tabacum Nitab4.5_0000278 2 CH_nta_129 2 3 0.000329164
Petunia axillaris Peaxi162Scf00951 2 CH_pax_351 2 2 0.000703556
Punica granatum NC_045128.1 2 CH_pgr_117 3 6 0.000000168898
Quercus lobata 10 2 CH_qlo_380 3 5 0.0000000399821
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_588 2 2 0.000119596
Solanum lycopersicum SL4.0ch05 2 CH_sly_477 2 2 0.000352164
Schrenkiella parvula ch4-6 2 CH_spa_218 2 2 0.000236202
Solanum pennellii Spenn-ch05 2 CH_spe_434 2 2 0.000266874
Solanum pennellii Spenn-ch03 2 CH_spe_531 2 3 0.000800581
Solanum tuberosum ST4.03ch03 2 CH_stu_512 2 2 0.000307472
Solanum tuberosum ST4.03ch05 2 CH_stu_513 2 2 0.000307472
Selenicereus undatus Scaffold_33675 2 CH_sun_239 2 2 0.000435983
Trochodendron aralioides group12 2 CH_tar_146 3 4 0.000000216254

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001