Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.MFS superfamily.DHA-1 family.metal chelator transporter (ZIF/TOM)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr12 1 CH_acertr_147 3 4 0.000000298174
Arabidopsis lyrata scaffold_6 1 CH_aly_308 2 2 0.000198013
Aquilegia oxysepala CHR02 1 CH_aox_77 3 6 0.00000019294
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.20 1 CH_arhy_580 2 2 0.000299383
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.10 1 CH_arhy_581 2 2 0.000299383
Arabidopsis thaliana Chr5 1 CH_ath_269 2 2 0.0000859476
Amborella trichopoda AmTr_v1.0_scaffold00095 1 CH_atr_61 4 19 0.00000000582677
Brassica carinata ChrC04 1 CH_bca_462 4 69 0.00000832201
Brassica napus C09 1 CH_bna_350 3 9 0.00000715233
Brassica oleracea C9 1 CH_bol_94 4 16 0.000000062843
Brassica rapa A02 1 CH_bra_355 2 2 0.00064397
Brassica rapa A03 1 CH_bra_356 2 2 0.00064397
Cannabis sativa NC_044376.1 1 CH_cansat_135 3 4 0.000000517376
Capsicum annuum PGAv.1.6.scaffold128 1 CH_can_198 3 5 0.00000573056
Capsicum annuum PGAv.1.6.scaffold134 1 CH_can_78 4 5 0.000000000591934
Cardamine hirsuta Chr6 1 CH_chi_232 2 2 0.0000691204
Capsella rubella scaffold_6 1 CH_cru_367 2 2 0.000438693
Daucus carota DCARv2_Chr9 1 CH_dca_33 5 9 0.00000000000196932
Eucalyptus grandis Chr07 1 CH_egr_161 5 6 0.0000000000000110895
Eutrema salsugineum scaffold_2 1 CH_esa_170 2 2 0.0000761499
Glycine max Gm06 1 CH_gma_170 3 3 0.000000181524
Glycine max Gm13 1 CH_gma_68 4 4 0.0000000000206703
Helianthus annuus HanXRQChr09 1 CH_han_160 4 6 0.000000000545215
Helianthus annuus HanXRQChr04 1 CH_han_343 3 6 0.00000537393
Lupinus albus Lalb_Chr19 1 CH_lal_15 6 10 1.58016e-16
Lonicera japonica GWHAAZE00000009 1 CH_lonja_542 2 2 0.000359324
Malus domestica Chr02 1 CH_mdo_471 2 2 0.000113763
Medicago truncatula chr8 1 CH_mtr_155 4 5 0.0000000000728233
Nelumbo nucifera chr7 1 CH_nnu_324 2 2 0.000130804
Oryza sativa ssp. japonica chr12 1 CH_osa_179 3 8 0.0000175604
Oryza sativa ssp. japonica chr11 1 CH_osa_38 5 11 0.0000000000116354
Petunia axillaris Peaxi162Scf00220 1 CH_pax_249 2 2 0.000211067
Punica granatum NC_045129.1 1 CH_pgr_112 3 4 0.000000135125
Pisum sativum chr4LG4 1 CH_psa_402 2 2 0.000782452
Papaver somniferum NC_039358.1 1 CH_pso_306 3 4 0.00000110784
Phaseolus vulgaris Chr11 1 CH_pvu_43 5 5 0.0000000000000275443
Rhododendron simsii chr05 1 CH_rsi_341 2 2 0.0000645307
Sechium edule LG07 1 CH_sed_200 2 2 0.0000713419
Sequoiadendron giganteum chr1 1 CH_sgi_264 4 4 0.00000000000520279
Solanum lycopersicum SL4.0ch01 1 CH_sly_164 3 3 0.000000180867
Schrenkiella parvula ch6-6 1 CH_spa_217 2 2 0.000236202
Solanum pennellii Spenn-ch01 1 CH_spe_124 3 3 0.0000000296764
Solanum tuberosum ST4.03ch01 1 CH_stu_138 3 3 0.0000000157569
Selenicereus undatus Scaffold_3410 1 CH_sun_86 3 10 0.0000189931
Trochodendron aralioides group7 1 CH_tar_354 2 2 0.00018011
Theobroma cacao Chromosome_9 1 CH_tca_394 2 2 0.000439432
Tarenaya hassleriana NW_010967707.1 1 CH_tha_14 4 4 0.00000000000511188
Trifolium pratense Tp57577_TGAC_v2_LG7 1 CH_tpr_12 5 5 0.0000000000000137934
Tripterygium wilfordii NC_052252.1 1 CH_twi_139 3 10 0.00000559208
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_241 2 2 0.0000929238
Vigna mungo CM024076.1 1 CH_vmu_53 4 12 0.00000000200225
Vitis vinifera chr13 1 CH_vvi_54 5 7 0.0000000000000316347
Zea mays 3 1 CH_zma_236 4 73 0.00043008
Acer truncatum chr12 2 CH_acertr_147 3 4 0.000000298174
Arabidopsis lyrata scaffold_6 2 CH_aly_308 2 2 0.000198013
Aquilegia oxysepala CHR02 2 CH_aox_77 3 6 0.00000019294
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.20 2 CH_arhy_580 2 2 0.000299383
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.10 2 CH_arhy_581 2 2 0.000299383
Arabidopsis thaliana Chr5 2 CH_ath_269 2 2 0.0000859476
Amborella trichopoda AmTr_v1.0_scaffold00095 2 CH_atr_61 4 19 0.00000000582677
Brassica carinata ChrC04 2 CH_bca_462 4 69 0.00000832201
Brassica oleracea C9 2 CH_bol_94 4 16 0.000000062843
Brassica rapa A02 2 CH_bra_355 2 2 0.00064397
Brassica rapa A03 2 CH_bra_356 2 2 0.00064397
Cannabis sativa NC_044376.1 2 CH_cansat_135 3 4 0.000000517376
Capsicum annuum PGAv.1.6.scaffold128 2 CH_can_198 3 5 0.00000573056
Capsicum annuum PGAv.1.6.scaffold134 2 CH_can_78 4 5 0.000000000591934
Cardamine hirsuta Chr6 2 CH_chi_232 2 2 0.0000691204
Capsella rubella scaffold_6 2 CH_cru_367 2 2 0.000438693
Daucus carota DCARv2_Chr9 2 CH_dca_33 5 9 0.00000000000196932
Eucalyptus grandis Chr07 2 CH_egr_161 5 6 0.0000000000000110895
Eutrema salsugineum scaffold_2 2 CH_esa_170 2 2 0.0000761499
Glycine max Gm06 2 CH_gma_170 3 3 0.000000181524
Glycine max Gm13 2 CH_gma_68 4 4 0.0000000000206703
Helianthus annuus HanXRQChr09 2 CH_han_160 4 6 0.000000000545215
Helianthus annuus HanXRQChr04 2 CH_han_343 3 6 0.00000537393
Lupinus albus Lalb_Chr19 2 CH_lal_15 6 10 1.58016e-16
Lotus japonicus chr3 2 CH_lja_215 3 6 0.00000858637
Lotus japonicus chr3 2 CH_lja_287 3 13 0.000122639
Lonicera japonica GWHAAZE00000009 2 CH_lonja_542 2 2 0.000359324
Malus domestica Chr02 2 CH_mdo_471 2 2 0.000113763
Nelumbo nucifera chr7 2 CH_nnu_324 2 2 0.000130804
Oryza sativa ssp. japonica chr12 2 CH_osa_179 3 8 0.0000175604
Oryza sativa ssp. japonica chr11 2 CH_osa_38 5 11 0.0000000000116354
Petunia axillaris Peaxi162Scf00220 2 CH_pax_249 2 2 0.000211067
Punica granatum NC_045129.1 2 CH_pgr_112 3 4 0.000000135125
Pisum sativum chr4LG4 2 CH_psa_402 2 2 0.000782452
Papaver somniferum NC_039358.1 2 CH_pso_306 3 4 0.00000110784
Phaseolus vulgaris Chr11 2 CH_pvu_43 5 5 0.0000000000000275443
Rhododendron simsii chr05 2 CH_rsi_341 2 2 0.0000645307
Sechium edule LG07 2 CH_sed_200 2 2 0.0000713419
Sequoiadendron giganteum chr1 2 CH_sgi_264 4 4 0.00000000000520279
Solanum lycopersicum SL4.0ch01 2 CH_sly_164 3 3 0.000000180867
Schrenkiella parvula ch6-6 2 CH_spa_217 2 2 0.000236202
Solanum pennellii Spenn-ch01 2 CH_spe_124 3 3 0.0000000296764
Solanum tuberosum ST4.03ch01 2 CH_stu_138 3 3 0.0000000157569
Selenicereus undatus Scaffold_3410 2 CH_sun_86 3 10 0.0000189931
Trochodendron aralioides group7 2 CH_tar_354 2 2 0.00018011
Theobroma cacao Chromosome_9 2 CH_tca_394 2 2 0.000439432
Tarenaya hassleriana NW_010967707.1 2 CH_tha_14 4 4 0.00000000000511188
Trifolium pratense Tp57577_TGAC_v2_LG7 2 CH_tpr_12 5 5 0.0000000000000137934
Tripterygium wilfordii NC_052252.1 2 CH_twi_139 3 10 0.00000559208
Vaccinium macrocarpon chr11_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_241 2 2 0.0000929238
Vigna mungo CM024076.1 2 CH_vmu_53 4 12 0.00000000200225
Vitis vinifera chr13 2 CH_vvi_54 5 7 0.0000000000000316347
Zea mays 3 2 CH_zma_236 4 73 0.00043008

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001