Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.APC superfamily.APC family.cationic amino acid transporter (CAT)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_12 | 1 | CH_amhyb_218 | 3 | 15 | 0.000405098 |
| Amborella trichopoda | AmTr_v1.0_scaffold00111 | 1 | CH_atr_112 | 3 | 3 | 0.000000795196 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 1 | CH_bvu_214 | 3 | 9 | 0.000189648 |
| Camellia sinensis var. sinensis | Contig1039 | 1 | CH_camsi_406 | 3 | 5 | 0.00000378378 |
| Cannabis sativa | NC_044378.1 | 1 | CH_cansat_180 | 3 | 8 | 0.0000202675 |
| Cicer arietinum L. | Ca_LG6_v3 | 1 | CH_car_247 | 3 | 11 | 0.00032905 |
| Carpinus fangiana | Cfa01 | 1 | CH_cfa_331 | 3 | 11 | 0.00031159 |
| Carya illinoinensis | Chr09 | 1 | CH_cil_258 | 3 | 3 | 0.00000126786 |
| Daucus carota | DCARv2_Chr1 | 1 | CH_dca_69 | 4 | 5 | 0.00000000278182 |
| Davidia involucrata | GWHABJS00000016 | 1 | CH_din_237 | 3 | 7 | 0.0000477559 |
| Lupinus albus | Lalb_Chr12 | 1 | CH_lal_149 | 3 | 4 | 0.00000925243 |
| Lotus japonicus | chr1 | 1 | CH_lja_180 | 3 | 3 | 0.00000168747 |
| Magnolia biondii | Chr07 | 1 | CH_mbi_290 | 3 | 8 | 0.0000237579 |
| Micromonas commoda | Chr_16 | 1 | CH_mco_17 | 2 | 2 | 0.000197961 |
| Malus domestica | Chr05 | 1 | CH_mdo_295 | 3 | 4 | 0.00000314013 |
| Medicago truncatula | chr6 | 1 | CH_mtr_187 | 4 | 5 | 0.00000000141989 |
| Medicago truncatula | chr8 | 1 | CH_mtr_472 | 3 | 6 | 0.0000230286 |
| Quercus lobata | 5 | 1 | CH_qlo_92 | 7 | 17 | 4.97126e-17 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_442 | 3 | 8 | 0.0000220119 |
| Rhododendron simsii | chr02 | 1 | CH_rsi_387 | 3 | 12 | 0.000115251 |
| Sequoiadendron giganteum | chr8 | 1 | CH_sgi_1190 | 3 | 13 | 0.000290578 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_324 | 4 | 4 | 0.000000000248 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_12 | 2 | CH_amhyb_218 | 3 | 15 | 0.000405098 |
| Amborella trichopoda | AmTr_v1.0_scaffold00111 | 2 | CH_atr_112 | 3 | 3 | 0.000000795196 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 2 | CH_bvu_214 | 3 | 9 | 0.000189648 |
| Camellia sinensis var. sinensis | Contig1039 | 2 | CH_camsi_406 | 3 | 5 | 0.00000378378 |
| Cannabis sativa | NC_044378.1 | 2 | CH_cansat_180 | 3 | 8 | 0.0000202675 |
| Cicer arietinum L. | Ca_LG6_v3 | 2 | CH_car_247 | 3 | 11 | 0.00032905 |
| Carpinus fangiana | Cfa01 | 2 | CH_cfa_331 | 3 | 11 | 0.00031159 |
| Carya illinoinensis | Chr09 | 2 | CH_cil_258 | 3 | 3 | 0.00000126786 |
| Daucus carota | DCARv2_Chr1 | 2 | CH_dca_69 | 4 | 5 | 0.00000000278182 |
| Davidia involucrata | GWHABJS00000016 | 2 | CH_din_237 | 3 | 7 | 0.0000477559 |
| Lupinus albus | Lalb_Chr12 | 2 | CH_lal_149 | 3 | 4 | 0.00000925243 |
| Lotus japonicus | chr1 | 2 | CH_lja_180 | 3 | 3 | 0.00000168747 |
| Magnolia biondii | Chr07 | 2 | CH_mbi_290 | 3 | 8 | 0.0000237579 |
| Micromonas commoda | Chr_16 | 2 | CH_mco_17 | 2 | 2 | 0.000197961 |
| Malus domestica | Chr05 | 2 | CH_mdo_295 | 3 | 4 | 0.00000314013 |
| Quercus lobata | 5 | 2 | CH_qlo_92 | 7 | 17 | 4.97126e-17 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_442 | 3 | 8 | 0.0000220119 |
| Rhododendron simsii | chr02 | 2 | CH_rsi_387 | 3 | 12 | 0.000115251 |
| Sequoiadendron giganteum | chr8 | 2 | CH_sgi_1190 | 3 | 13 | 0.000290578 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_324 | 4 | 4 | 0.000000000248 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |