Functional clusters

Information

  • Type MapMan
  • Description Solute transport.primary active transport

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Fragaria x ananassa Fvb5-1 1 CH_fan_332 5 8 0.0000353013
Fragaria x ananassa Fvb6-2 1 CH_fan_571 8 67 0.000557724
Manihot esculenta Chromosome04 1 CH_mes_320 5 10 0.000107305
Sequoiadendron giganteum chr7 1 CH_sgi_1180 5 13 0.000215347
Sequoiadendron giganteum chr2 1 CH_sgi_290 8 13 0.000000000030879
Theobroma cacao Chromosome_5 1 CH_tca_260 4 4 0.0000414991
Fragaria x ananassa Fvb5-1 2 CH_fan_332 5 8 0.0000353013
Fragaria x ananassa Fvb6-2 2 CH_fan_571 8 67 0.000557724
Manihot esculenta Chromosome04 2 CH_mes_320 5 10 0.000107305
Sequoiadendron giganteum chr7 2 CH_sgi_1180 5 13 0.000215347
Sequoiadendron giganteum chr2 2 CH_sgi_290 8 13 0.000000000030879
Theobroma cacao Chromosome_5 2 CH_tca_260 4 4 0.0000414991

Available child term results

Ontology identifier Description Number of clusters
24.1.1.1 Solute transport.primary active transport.V-type ATPase complex.membrane V0 subcomplex 8
24.1.1.1.1 Solute transport.primary active transport.V-type ATPase complex.membrane V0 subcomplex.subunit a 12
24.1.1.1.2 Solute transport.primary active transport.V-type ATPase complex.membrane V0 subcomplex.subunit c 12
24.1.1.1.3 Solute transport.primary active transport.V-type ATPase complex.membrane V0 subcomplex.subunit d 27
24.1.1.1.4 Solute transport.primary active transport.V-type ATPase complex.membrane V0 subcomplex.subunit e 2
24.1.1.2.1 Solute transport.primary active transport.V-type ATPase complex.peripheral V1 subcomplex.subunit A 6
24.1.1.2.2 Solute transport.primary active transport.V-type ATPase complex.peripheral V1 subcomplex.subunit B 6
24.1.1.2.3 Solute transport.primary active transport.V-type ATPase complex.peripheral V1 subcomplex.subunit C 7
24.1.1.2.4 Solute transport.primary active transport.V-type ATPase complex.peripheral V1 subcomplex.subunit D 4
24.1.1.2.5 Solute transport.primary active transport.V-type ATPase complex.peripheral V1 subcomplex.subunit E 8
24.1.1.2.6 Solute transport.primary active transport.V-type ATPase complex.peripheral V1 subcomplex.subunit F 6
24.1.1.2.7 Solute transport.primary active transport.V-type ATPase complex.peripheral V1 subcomplex.subunit G 4
24.1.1.2.8 Solute transport.primary active transport.V-type ATPase complex.peripheral V1 subcomplex.subunit H 38
24.1.1.3 Solute transport.primary active transport.V-type ATPase complex.assembly factor (VMA21) 2
24.1.2 Solute transport.primary active transport.P-type ATPase superfamily 10
24.1.2.1.1 Solute transport.primary active transport.P-type ATPase superfamily.P1 family.P1B-type heavy metal cation-transporting ATPase (HMA) 47
24.1.2.2.1 Solute transport.primary active transport.P-type ATPase superfamily.P2 family.P2A-type calcium cation-transporting ATPase (ECA) 16
24.1.2.2.2 Solute transport.primary active transport.P-type ATPase superfamily.P2 family.P2B-type calcium cation-transporting ATPase (ACA) 84
24.1.2.3.1 Solute transport.primary active transport.P-type ATPase superfamily.P3 family.P3A-type proton-translocating ATPase (AHA) 12
24.1.2.4.1.1 Solute transport.primary active transport.P-type ATPase superfamily.P4 family.phospholipid flippase complex.P4-type ATPase component ALA 22
24.1.2.4.1.2 Solute transport.primary active transport.P-type ATPase superfamily.P4 family.phospholipid flippase complex.regulatory component ALIS 3
24.1.2.5.1 Solute transport.primary active transport.P-type ATPase superfamily.P5 family.P5-type cation-transporting ATPase (MIA) 14
24.1.3 Solute transport.primary active transport.ABC superfamily 13
24.1.3.1.1 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter 114
24.1.3.1.2 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCC transporter 175
24.1.3.1.3 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter 12
24.1.3.2 Solute transport.primary active transport.ABC superfamily.ABC2 family 2
24.1.3.2.1 Solute transport.primary active transport.ABC superfamily.ABC2 family.subfamily ABCA transporter 184
24.1.3.2.2 Solute transport.primary active transport.ABC superfamily.ABC2 family.subfamily ABCG transporter 307
24.1.4.1 Solute transport.primary active transport.VHP PPase family.proton-translocating pyrophosphatase (VHP1) 2
24.1.4.2 Solute transport.primary active transport.VHP PPase family.proton-translocating pyrophosphatase (VHP2) 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001