Functional clusters

Information

  • Type MapMan
  • Description Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCC transporter

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_117 1 CH_aag_60 3 4 0.0000216338
Arabidopsis lyrata scaffold_3 1 CH_aly_170 3 3 0.00000186904
Amaranthus hybridus AmaHy_arrow1_Scaffold_13 1 CH_amhyb_42 4 6 0.000000129899
Amaranthus hybridus AmaHy_arrow1_Scaffold_7 1 CH_amhyb_90 3 3 0.0000121166
Aquilegia oxysepala CHR07 1 CH_aox_115 3 3 0.0000128321
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 1 CH_arhy_390 3 3 0.0000165922
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 1 CH_arhy_447 3 4 0.0000663379
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 1 CH_arhy_489 3 5 0.000165768
Arabidopsis thaliana Chr3 1 CH_ath_177 3 4 0.00000224043
Amborella trichopoda AmTr_v1.0_scaffold00056 1 CH_atr_138 3 4 0.0000108262
Brassica carinata ChrC01 1 CH_bca_572 3 6 0.0000400735
Brassica napus C01 1 CH_bna_172 4 6 0.0000000389797
Brassica napus C03 1 CH_bna_561 3 7 0.000239017
Camellia sinensis var. sinensis Chr12 1 CH_camsi_310 4 7 0.00000036349
Cannabis sativa NC_044374.1 1 CH_cansat_191 3 5 0.0000294096
Citrus clementina scaffold_1 1 CH_ccl_105 4 4 0.00000000394173
Carpinus fangiana Cfa08 1 CH_cfa_81 4 6 0.0000000050517
Carpinus fangiana Cfa06 1 CH_cfa_82 4 4 0.0000000050517
Cardamine hirsuta Chr3 1 CH_chi_167 3 3 0.00000326085
Carya illinoinensis Chr08 1 CH_cil_286 3 3 0.0000047026
Carya illinoinensis Chr11 1 CH_cil_314 3 4 0.0000188032
Cucumis melo chr06 1 CH_cme_149 3 5 0.0000373576
Chenopodium quinoa C_Quinoa_Scaffold_1783 1 CH_cqu_80 5 6 0.000000000276927
Chenopodium quinoa C_Quinoa_Scaffold_2963 1 CH_cqu_81 5 6 0.000000000276927
Capsella rubella scaffold_3 1 CH_cru_197 3 3 0.00000364869
Durio zibethinus NW_019167993.1 1 CH_dzi_159 3 3 0.0000049625
Erigeron canadensis Conyza_canadensis_scaffold:9 1 CH_eca_228 3 4 0.0000137685
Erigeron canadensis Conyza_canadensis_scaffold:5 1 CH_eca_442 3 10 0.000412291
Eucalyptus grandis Chr06 1 CH_egr_271 5 6 0.000000000106276
Eucalyptus grandis Chr04 1 CH_egr_90 9 16 6.23971e-20
Fragaria vesca Fvb5 1 CH_fve_112 4 5 0.0000000183475
Gossypium hirsutum D11 1 CH_ghi_190 4 4 0.0000000101873
Gossypium hirsutum A10 1 CH_ghi_468 3 4 0.0000693346
Gossypium hirsutum A11 1 CH_ghi_469 3 4 0.0000693346
Glycine max Gm16 1 CH_gma_299 3 3 0.0000197493
Glycine max Gm02 1 CH_gma_300 3 3 0.0000197493
Glycine max Gm08 1 CH_gma_408 3 5 0.000197283
Gossypium raimondii Chr07 1 CH_gra_105 4 4 0.00000000691117
Gossypium raimondii Chr11 1 CH_gra_210 3 3 0.0000112093
Helianthus annuus HanXRQChr13 1 CH_han_223 4 6 0.000000093298
Lotus japonicus chr2 1 CH_lja_126 4 6 0.000000145547
Lonicera japonica GWHAAZE00000002 1 CH_lonja_433 4 31 0.000177212
Lactuca sativa Lsat_1_v8_lg_9 1 CH_lsa_294 4 20 0.0000143489
Lactuca sativa Lsat_1_v8_lg_6 1 CH_lsa_305 3 4 0.0000244034
Magnolia biondii Chr07 1 CH_mbi_291 3 5 0.0000240455
Magnolia biondii Chr04 1 CH_mbi_616 3 12 0.000527968
Malus domestica Chr11 1 CH_mdo_144 4 4 0.00000000244586
Malus domestica Chr06 1 CH_mdo_317 3 3 0.00000560836
Marchantia polymorpha scaffold_32 1 CH_mpo_65 3 5 0.0000831606
Medicago truncatula chr8 1 CH_mtr_183 5 8 0.000000000786168
Medicago truncatula chr3 1 CH_mtr_309 4 6 0.000000284904
Medicago truncatula chr2 1 CH_mtr_475 3 3 0.0000250179
Medicago truncatula chr6 1 CH_mtr_82 7 12 0.00000000000000557813
Prunus persica Pp05 1 CH_ppe_264 3 3 0.00000951582
Prunus persica Pp04 1 CH_ppe_306 3 4 0.0000380438
Prunus persica Pp01 1 CH_ppe_307 3 4 0.0000380438
Papaver somniferum NC_039359.1 1 CH_pso_413 3 4 0.0000461879
Papaver somniferum NC_039368.1 1 CH_pso_51 8 33 0.00000000000000332376
Papaver somniferum NC_039359.1 1 CH_pso_663 3 8 0.000645663
Papaver somniferum NW_020631041.1 1 CH_pso_89 7 30 0.00000000000111033
Populus trichocarpa scaffold_67 1 CH_ptr_275 3 3 0.0000203464
Populus trichocarpa Chr03 1 CH_ptr_276 3 3 0.0000203464
Phaseolus vulgaris Chr10 1 CH_pvu_315 3 4 0.0000744505
Quercus lobata 9 1 CH_qlo_218 6 14 0.0000000000273223
Quercus lobata 8 1 CH_qlo_83 8 14 1.28029e-17
Quercus lobata CM012294 1 CH_qlo_841 3 5 0.000217889
Quercus lobata 5 1 CH_qlo_842 3 5 0.000217889
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_177 5 10 0.00000000113032
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_420 3 3 0.0000130066
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_421 3 3 0.0000130066
Rosa chinensis RcHm_v2.0_Chr2 1 CH_rch_685 3 6 0.000259766
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_686 3 6 0.000259766
Rhododendron simsii chr02 1 CH_rsi_310 3 4 0.0000332159
Rhododendron simsii chr06 1 CH_rsi_91 5 7 0.0000000000555356
Salix brachista GWHAAZH00000016 1 CH_sbr_176 3 3 0.00000792191
Sechium edule LG07 1 CH_sed_148 3 3 0.0000117576
Sechium edule LG10 1 CH_sed_149 3 3 0.0000117576
Sequoiadendron giganteum chr3 1 CH_sgi_104 9 21 3.68581e-19
Sequoiadendron giganteum chr3 1 CH_sgi_1349 3 7 0.000616618
Sequoiadendron giganteum chr5 1 CH_sgi_337 5 8 0.000000000475587
Schrenkiella parvula ch3-1 1 CH_spa_127 3 3 0.00000338481
Solanum tuberosum ST4.03ch11 1 CH_stu_112 4 4 0.00000000123548
Trifolium pratense Tp57577_TGAC_v2_LG6 1 CH_tpr_105 6 45 0.000000209926
Trifolium pratense Tp57577_TGAC_v2_LG2 1 CH_tpr_23 6 11 0.0000000000122293
Trifolium pratense Tp57577_TGAC_v2_LG1 1 CH_tpr_391 3 6 0.000626695
Vitis vinifera chr10 1 CH_vvi_398 3 7 0.000536641
Vitis vinifera chr2 1 CH_vvi_63 6 10 0.00000000000121199
Vitis vinifera chr19 1 CH_vvi_90 5 7 0.000000000177221
Zea mays 7 1 CH_zma_128 3 5 0.0000178347
Anthoceros agrestis Sc2ySwM_117 2 CH_aag_60 3 4 0.0000216338
Arabidopsis lyrata scaffold_3 2 CH_aly_170 3 3 0.00000186904
Amaranthus hybridus AmaHy_arrow1_Scaffold_13 2 CH_amhyb_42 4 6 0.000000129899
Amaranthus hybridus AmaHy_arrow1_Scaffold_7 2 CH_amhyb_90 3 3 0.0000121166
Aquilegia oxysepala CHR07 2 CH_aox_115 3 3 0.0000128321
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.17 2 CH_arhy_390 3 3 0.0000165922
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 2 CH_arhy_447 3 4 0.0000663379
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 2 CH_arhy_489 3 5 0.000165768
Arabidopsis thaliana Chr3 2 CH_ath_177 3 4 0.00000224043
Amborella trichopoda AmTr_v1.0_scaffold00056 2 CH_atr_138 3 4 0.0000108262
Brassica carinata ChrC01 2 CH_bca_572 3 6 0.0000400735
Camellia sinensis var. sinensis Chr12 2 CH_camsi_310 4 7 0.00000036349
Cannabis sativa NC_044374.1 2 CH_cansat_191 3 5 0.0000294096
Citrus clementina scaffold_1 2 CH_ccl_105 4 4 0.00000000394173
Carpinus fangiana Cfa08 2 CH_cfa_81 4 6 0.0000000050517
Carpinus fangiana Cfa06 2 CH_cfa_82 4 4 0.0000000050517
Cardamine hirsuta Chr3 2 CH_chi_167 3 3 0.00000326085
Carya illinoinensis Chr08 2 CH_cil_286 3 3 0.0000047026
Carya illinoinensis Chr11 2 CH_cil_314 3 4 0.0000188032
Cucumis melo chr06 2 CH_cme_149 3 5 0.0000373576
Chenopodium quinoa C_Quinoa_Scaffold_1783 2 CH_cqu_80 5 6 0.000000000276927
Chenopodium quinoa C_Quinoa_Scaffold_2963 2 CH_cqu_81 5 6 0.000000000276927
Capsella rubella scaffold_3 2 CH_cru_197 3 3 0.00000364869
Durio zibethinus NW_019167993.1 2 CH_dzi_159 3 3 0.0000049625
Erigeron canadensis Conyza_canadensis_scaffold:9 2 CH_eca_228 3 4 0.0000137685
Erigeron canadensis Conyza_canadensis_scaffold:5 2 CH_eca_442 3 10 0.000412291
Eucalyptus grandis Chr06 2 CH_egr_271 5 6 0.000000000106276
Eucalyptus grandis Chr05 2 CH_egr_389 4 4 0.0000000216301
Eucalyptus grandis Chr05 2 CH_egr_629 3 3 0.0000254862
Eucalyptus grandis Chr08 2 CH_egr_630 3 3 0.0000254862
Eucalyptus grandis Chr04 2 CH_egr_90 9 16 6.23971e-20
Fragaria vesca Fvb5 2 CH_fve_112 4 5 0.0000000183475
Gossypium hirsutum D11 2 CH_ghi_190 4 4 0.0000000101873
Gossypium hirsutum A10 2 CH_ghi_468 3 4 0.0000693346
Gossypium hirsutum A11 2 CH_ghi_469 3 4 0.0000693346
Glycine max Gm16 2 CH_gma_299 3 3 0.0000197493
Glycine max Gm02 2 CH_gma_300 3 3 0.0000197493
Glycine max Gm08 2 CH_gma_408 3 5 0.000197283
Gossypium raimondii Chr07 2 CH_gra_105 4 4 0.00000000691117
Gossypium raimondii Chr11 2 CH_gra_210 3 3 0.0000112093
Helianthus annuus HanXRQChr13 2 CH_han_223 4 6 0.000000093298
Lotus japonicus chr2 2 CH_lja_126 4 6 0.000000145547
Lonicera japonica GWHAAZE00000002 2 CH_lonja_433 4 31 0.000177212
Lactuca sativa Lsat_1_v8_lg_9 2 CH_lsa_294 4 20 0.0000143489
Lactuca sativa Lsat_1_v8_lg_6 2 CH_lsa_305 3 4 0.0000244034
Magnolia biondii Chr07 2 CH_mbi_291 3 5 0.0000240455
Magnolia biondii Chr04 2 CH_mbi_616 3 12 0.000527968
Malus domestica Chr11 2 CH_mdo_144 4 4 0.00000000244586
Malus domestica Chr06 2 CH_mdo_317 3 3 0.00000560836
Marchantia polymorpha scaffold_32 2 CH_mpo_65 3 5 0.0000831606
Prunus persica Pp05 2 CH_ppe_264 3 3 0.00000951582
Prunus persica Pp04 2 CH_ppe_306 3 4 0.0000380438
Prunus persica Pp01 2 CH_ppe_307 3 4 0.0000380438
Papaver somniferum NC_039359.1 2 CH_pso_413 3 4 0.0000461879
Papaver somniferum NC_039368.1 2 CH_pso_51 8 33 0.00000000000000332376
Papaver somniferum NC_039359.1 2 CH_pso_663 3 8 0.000645663
Papaver somniferum NW_020631041.1 2 CH_pso_89 7 30 0.00000000000111033
Populus trichocarpa scaffold_67 2 CH_ptr_275 3 3 0.0000203464
Populus trichocarpa Chr03 2 CH_ptr_276 3 3 0.0000203464
Phaseolus vulgaris Chr10 2 CH_pvu_315 3 4 0.0000744505
Quercus lobata 9 2 CH_qlo_218 6 14 0.0000000000273223
Quercus lobata 8 2 CH_qlo_83 8 14 1.28029e-17
Quercus lobata CM012294 2 CH_qlo_841 3 5 0.000217889
Quercus lobata 5 2 CH_qlo_842 3 5 0.000217889
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_177 5 10 0.00000000113032
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_420 3 3 0.0000130066
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_421 3 3 0.0000130066
Rosa chinensis RcHm_v2.0_Chr2 2 CH_rch_685 3 6 0.000259766
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_686 3 6 0.000259766
Rhododendron simsii chr02 2 CH_rsi_310 3 4 0.0000332159
Rhododendron simsii chr06 2 CH_rsi_91 5 7 0.0000000000555356
Salix brachista GWHAAZH00000016 2 CH_sbr_176 3 3 0.00000792191
Sechium edule LG07 2 CH_sed_148 3 3 0.0000117576
Sechium edule LG10 2 CH_sed_149 3 3 0.0000117576
Sequoiadendron giganteum chr3 2 CH_sgi_104 9 21 3.68581e-19
Sequoiadendron giganteum chr3 2 CH_sgi_1349 3 7 0.000616618
Sequoiadendron giganteum chr5 2 CH_sgi_337 5 8 0.000000000475587
Schrenkiella parvula ch3-1 2 CH_spa_127 3 3 0.00000338481
Solanum tuberosum ST4.03ch11 2 CH_stu_112 4 4 0.00000000123548
Trifolium pratense Tp57577_TGAC_v2_LG6 2 CH_tpr_105 6 45 0.000000209926
Trifolium pratense Tp57577_TGAC_v2_LG2 2 CH_tpr_23 6 11 0.0000000000122293
Trifolium pratense Tp57577_TGAC_v2_LG1 2 CH_tpr_391 3 6 0.000626695
Vitis vinifera chr10 2 CH_vvi_398 3 7 0.000536641
Vitis vinifera chr2 2 CH_vvi_63 6 10 0.00000000000121199
Vitis vinifera chr19 2 CH_vvi_90 5 7 0.000000000177221
Zea mays 7 2 CH_zma_128 3 5 0.0000178347

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001