Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.MFS superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Anthoceros agrestis | Sc2ySwM_344 | 1 | CH_aag_57 | 5 | 12 | 0.0000200642 |
| Actinidia chinensis | Lachesis_group0 | 1 | CH_ach_14 | 10 | 32 | 0.000000000347699 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_11 | 1 | CH_amhyb_65 | 6 | 12 | 0.00000187036 |
| Capsicum annuum | PGAv.1.6.scaffold999 | 1 | CH_can_369 | 6 | 24 | 0.000344941 |
| Citrus clementina | scaffold_3 | 1 | CH_ccl_187 | 7 | 17 | 0.00000114305 |
| Carya illinoinensis | Chr11 | 1 | CH_cil_277 | 6 | 12 | 0.00000362708 |
| Cucumis melo | chr02 | 1 | CH_cme_209 | 5 | 10 | 0.0000732962 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 1 | CH_lsa_115 | 9 | 28 | 0.00000000169419 |
| Magnolia biondii | Chr04 | 1 | CH_mbi_621 | 4 | 7 | 0.000612718 |
| Oryza sativa ssp. japonica | chr04 | 1 | CH_osa_229 | 4 | 5 | 0.0000713532 |
| Punica granatum | NC_045134.1 | 1 | CH_pgr_376 | 5 | 14 | 0.000980971 |
| Quercus lobata | 10 | 1 | CH_qlo_54 | 16 | 30 | 7.69382e-21 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 1 | CH_rch_636 | 6 | 27 | 0.000210511 |
| Rhododendron simsii | chr12 | 1 | CH_rsi_316 | 5 | 8 | 0.0000484015 |
| Sequoiadendron giganteum | chr9 | 1 | CH_sgi_257 | 10 | 20 | 0.00000000000293461 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_461 | 7 | 11 | 0.0000000146967 |
| Solanum lycopersicum | SL4.0ch03 | 1 | CH_sly_375 | 6 | 20 | 0.000122889 |
| Solanum tuberosum | ST4.03ch03 | 1 | CH_stu_326 | 5 | 8 | 0.0000232002 |
| Theobroma cacao | Chromosome_9 | 1 | CH_tca_373 | 6 | 22 | 0.000343802 |
| Vanilla planifolia | CM028153.1 | 1 | CH_vpl_62 | 5 | 5 | 0.000000473564 |
| Anthoceros agrestis | Sc2ySwM_344 | 2 | CH_aag_57 | 5 | 12 | 0.0000200642 |
| Actinidia chinensis | Lachesis_group0 | 2 | CH_ach_14 | 10 | 32 | 0.000000000347699 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_11 | 2 | CH_amhyb_65 | 6 | 12 | 0.00000187036 |
| Capsicum annuum | PGAv.1.6.scaffold999 | 2 | CH_can_369 | 6 | 24 | 0.000344941 |
| Citrus clementina | scaffold_3 | 2 | CH_ccl_187 | 7 | 17 | 0.00000114305 |
| Carya illinoinensis | Chr11 | 2 | CH_cil_277 | 6 | 12 | 0.00000362708 |
| Cucumis melo | chr02 | 2 | CH_cme_209 | 5 | 10 | 0.0000732962 |
| Eucalyptus grandis | Chr11 | 2 | CH_egr_517 | 7 | 16 | 0.00000107934 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 2 | CH_lsa_115 | 9 | 28 | 0.00000000169419 |
| Magnolia biondii | Chr04 | 2 | CH_mbi_621 | 4 | 7 | 0.000612718 |
| Oryza sativa ssp. japonica | chr04 | 2 | CH_osa_229 | 4 | 5 | 0.0000713532 |
| Punica granatum | NC_045134.1 | 2 | CH_pgr_376 | 5 | 14 | 0.000980971 |
| Quercus lobata | 10 | 2 | CH_qlo_54 | 16 | 30 | 7.69382e-21 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 2 | CH_rch_636 | 6 | 27 | 0.000210511 |
| Rhododendron simsii | chr12 | 2 | CH_rsi_316 | 5 | 8 | 0.0000484015 |
| Sequoiadendron giganteum | chr9 | 2 | CH_sgi_257 | 10 | 20 | 0.00000000000293461 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_461 | 7 | 11 | 0.0000000146967 |
| Solanum lycopersicum | SL4.0ch03 | 2 | CH_sly_375 | 6 | 20 | 0.000122889 |
| Solanum tuberosum | ST4.03ch03 | 2 | CH_stu_326 | 5 | 8 | 0.0000232002 |
| Theobroma cacao | Chromosome_9 | 2 | CH_tca_373 | 6 | 22 | 0.000343802 |
| Vanilla planifolia | CM028153.1 | 2 | CH_vpl_62 | 5 | 5 | 0.000000473564 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| 24.2.2.1 | Solute transport.carrier-mediated transport.MFS superfamily.SP family | 4 |
| 24.2.2.1.2 | Solute transport.carrier-mediated transport.MFS superfamily.SP family.hexose transporter (VGT) | 12 |
| 24.2.2.1.3 | Solute transport.carrier-mediated transport.MFS superfamily.SP family.inositol transporter (INT) | 51 |
| 24.2.2.1.4 | Solute transport.carrier-mediated transport.MFS superfamily.SP family.monosaccharide transporter (AZT) | 25 |
| 24.2.2.1.5 | Solute transport.carrier-mediated transport.MFS superfamily.SP family.monosaccharide transporter (ERD6) | 175 |
| 24.2.2.1.6 | Solute transport.carrier-mediated transport.MFS superfamily.SP family.monosaccharide transporter (STP) | 165 |
| 24.2.2.1.7 | Solute transport.carrier-mediated transport.MFS superfamily.SP family.polyol/monosaccharide transporter (PLT) | 99 |
| 24.2.2.10 | Solute transport.carrier-mediated transport.MFS superfamily.nitrate transporter (NRT2) | 109 |
| 24.2.2.11 | Solute transport.carrier-mediated transport.MFS superfamily.N-acetylglucosamine transporter (NGT) | 32 |
| 24.2.2.12 | Solute transport.carrier-mediated transport.MFS superfamily.organic anion transporter (OATP) | 26 |
| 24.2.2.13 | Solute transport.carrier-mediated transport.MFS superfamily.iron-regulated metal cation transporter (FPN) | 10 |
| 24.2.2.14 | Solute transport.carrier-mediated transport.MFS superfamily.ATP:ADP antiporter (NTT) | 12 |
| 24.2.2.15 | Solute transport.carrier-mediated transport.MFS superfamily.molybdate anion transporter (MOT2) | 7 |
| 24.2.2.16 | Solute transport.carrier-mediated transport.MFS superfamily.anion transporter (Fabaceae-N70) | 137 |
| 24.2.2.17 | Solute transport.carrier-mediated transport.MFS superfamily.solute transporter (UNE2) | 98 |
| 24.2.2.2.1 | Solute transport.carrier-mediated transport.MFS superfamily.DHA-1 family.metal chelator transporter (ZIF/TOM) | 106 |
| 24.2.2.2.2 | Solute transport.carrier-mediated transport.MFS superfamily.DHA-1 family.metal chelator transporter (TCR) | 54 |
| 24.2.2.2.3 | Solute transport.carrier-mediated transport.MFS superfamily.DHA-1 family.phosphate transporter (PHT5) | 26 |
| 24.2.2.3.1 | Solute transport.carrier-mediated transport.MFS superfamily.OCT family.nicotinate transporter (NiaP) | 32 |
| 24.2.2.3.2 | Solute transport.carrier-mediated transport.MFS superfamily.OCT family.organic cation transporter (OCT) | 88 |
| 24.2.2.4 | Solute transport.carrier-mediated transport.MFS superfamily.sugar transporter (SUT/SUC) | 69 |
| 24.2.2.5 | Solute transport.carrier-mediated transport.MFS superfamily.small solute transporter (BT1) | 25 |
| 24.2.2.6 | Solute transport.carrier-mediated transport.MFS superfamily.phosphate transporter (PHT1) | 167 |
| 24.2.2.7 | Solute transport.carrier-mediated transport.MFS superfamily.phosphate transporter (PHT4) | 18 |
| 24.2.2.8 | Solute transport.carrier-mediated transport.MFS superfamily.organic phosphate/glycerol-3-phosphate permease (G3P) | 23 |
| 24.2.2.9 | Solute transport.carrier-mediated transport.MFS superfamily.anion transporter (NRT1/PTR) | 669 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |