Functional clusters
Information
- Type MapMan
- Description Solute transport.carrier-mediated transport.MFS superfamily.OCT family.organic cation transporter (OCT)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-7 | 1 | CH_aar_114 | 3 | 7 | 0.0000152837 |
| Acer truncatum | chr12 | 1 | CH_acertr_26 | 7 | 40 | 0.00000000000060358 |
| Acer truncatum | chr1 | 1 | CH_acertr_78 | 4 | 5 | 0.00000000525951 |
| Brassica carinata | ChrC08 | 1 | CH_bca_178 | 4 | 7 | 0.0000000129674 |
| Brassica carinata | ChrB02 | 1 | CH_bca_502 | 3 | 5 | 0.0000157591 |
| Brassica napus | C06 | 1 | CH_bna_470 | 3 | 6 | 0.0000562955 |
| Brassica napus | C05 | 1 | CH_bna_6 | 7 | 8 | 1.09702e-19 |
| Brassica oleracea | C5 | 1 | CH_bol_163 | 3 | 4 | 0.0000035892 |
| Brassica oleracea | C6 | 1 | CH_bol_211 | 3 | 6 | 0.0000179397 |
| Brassica rapa | A07 | 1 | CH_bra_171 | 3 | 6 | 0.0000158055 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 1 | CH_bvu_2 | 8 | 8 | 1.38701e-24 |
| Capsicum annuum | PGAv.1.6.scaffold162 | 1 | CH_can_126 | 3 | 3 | 0.000000102372 |
| Cicer arietinum L. | Ca_LG1_v3 | 1 | CH_car_6 | 4 | 4 | 0.0000000000212181 |
| Corylus avellana | 7 | 1 | CH_cav_172 | 3 | 6 | 0.00000352574 |
| Citrus clementina | scaffold_9 | 1 | CH_ccl_482 | 2 | 2 | 0.000820311 |
| Carya illinoinensis | Chr16 | 1 | CH_cil_138 | 4 | 5 | 0.000000000125017 |
| Cucumis melo | chr04 | 1 | CH_cme_235 | 2 | 2 | 0.000200133 |
| Carica papaya | supercontig_80 | 1 | CH_cpa_342 | 2 | 2 | 0.000570396 |
| Cucumis sativus L. | chr3 | 1 | CH_csa_261 | 2 | 2 | 0.000250428 |
| Daucus carota | DCARv2_Chr3 | 1 | CH_dca_427 | 2 | 2 | 0.000637775 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 1 | CH_eca_479 | 2 | 2 | 0.000673083 |
| Gossypium hirsutum | D12 | 1 | CH_ghi_305 | 3 | 3 | 0.000000727242 |
| Gossypium raimondii | Chr08 | 1 | CH_gra_153 | 3 | 3 | 0.000000362147 |
| Helianthus annuus | HanXRQChr11 | 1 | CH_han_690 | 2 | 2 | 0.000579643 |
| Lupinus albus | Lalb_Chr22 | 1 | CH_lal_28 | 5 | 9 | 0.00000000000015054 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 1 | CH_lsa_453 | 2 | 2 | 0.000308404 |
| Magnolia biondii | Chr18 | 1 | CH_mbi_51 | 6 | 19 | 0.0000000000000760944 |
| Medicago truncatula | chr2 | 1 | CH_mtr_353 | 3 | 3 | 0.000000724204 |
| Nicotiana tabacum | Nitab4.5_0000161 | 1 | CH_nta_18 | 5 | 13 | 0.0000000027918 |
| Nicotiana tabacum | Nitab4.5_0001615 | 1 | CH_nta_66 | 3 | 3 | 0.00000657425 |
| Olea europaea | chr6 | 1 | CH_oeu_93 | 3 | 5 | 0.00000149561 |
| Prunus persica | Pp04 | 1 | CH_ppe_42 | 6 | 8 | 1.01889e-17 |
| Pisum sativum | chr5LG3 | 1 | CH_psa_158 | 3 | 5 | 0.0000034276 |
| Papaver somniferum | NC_039359.1 | 1 | CH_pso_628 | 2 | 2 | 0.000472989 |
| Quercus lobata | 4 | 1 | CH_qlo_35 | 10 | 23 | 1.69031e-25 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_179 | 4 | 12 | 0.00000000141074 |
| Rhododendron simsii | chr01 | 1 | CH_rsi_434 | 2 | 2 | 0.000193592 |
| Striga asiatica | scaffold239 | 1 | CH_sas_40 | 3 | 7 | 0.00000967553 |
| Simmondsia chinensis | GWHAASQ00000003 | 1 | CH_sci_56 | 3 | 3 | 0.000000108744 |
| Sequoiadendron giganteum | chr8 | 1 | CH_sgi_78 | 8 | 14 | 3.04826e-22 |
| Solanum pennellii | Spenn-ch07 | 1 | CH_spe_563 | 2 | 2 | 0.00093406 |
| Solanum tuberosum | ST4.03ch07 | 1 | CH_stu_237 | 3 | 4 | 0.00000132339 |
| Trochodendron aralioides | group0 | 1 | CH_tar_138 | 3 | 3 | 0.000000189236 |
| Vaccinium macrocarpon | scaffold00295_Vaccinium_macrocarpon_Stevens_v1 | 1 | CH_vma_110 | 3 | 3 | 0.000000129529 |
| Vigna mungo | CM024076.1 | 1 | CH_vmu_131 | 3 | 4 | 0.00000300548 |
| Aethionema arabicum | LG-7 | 2 | CH_aar_114 | 3 | 7 | 0.0000152837 |
| Acer truncatum | chr12 | 2 | CH_acertr_26 | 7 | 40 | 0.00000000000060358 |
| Acer truncatum | chr1 | 2 | CH_acertr_78 | 4 | 5 | 0.00000000525951 |
| Brassica carinata | ChrC08 | 2 | CH_bca_178 | 4 | 7 | 0.0000000129674 |
| Brassica carinata | ChrB02 | 2 | CH_bca_502 | 3 | 5 | 0.0000157591 |
| Brassica oleracea | C5 | 2 | CH_bol_163 | 3 | 4 | 0.0000035892 |
| Brassica oleracea | C6 | 2 | CH_bol_211 | 3 | 6 | 0.0000179397 |
| Brassica rapa | A07 | 2 | CH_bra_171 | 3 | 6 | 0.0000158055 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 2 | CH_bvu_2 | 8 | 8 | 1.38701e-24 |
| Capsicum annuum | PGAv.1.6.scaffold162 | 2 | CH_can_126 | 3 | 3 | 0.000000102372 |
| Cicer arietinum L. | Ca_LG1_v3 | 2 | CH_car_6 | 4 | 4 | 0.0000000000212181 |
| Corylus avellana | 7 | 2 | CH_cav_172 | 3 | 6 | 0.00000352574 |
| Citrus clementina | scaffold_9 | 2 | CH_ccl_482 | 2 | 2 | 0.000820311 |
| Carya illinoinensis | Chr16 | 2 | CH_cil_138 | 4 | 5 | 0.000000000125017 |
| Cucumis melo | chr04 | 2 | CH_cme_235 | 2 | 2 | 0.000200133 |
| Carica papaya | supercontig_80 | 2 | CH_cpa_342 | 2 | 2 | 0.000570396 |
| Cucumis sativus L. | chr3 | 2 | CH_csa_261 | 2 | 2 | 0.000250428 |
| Daucus carota | DCARv2_Chr3 | 2 | CH_dca_427 | 2 | 2 | 0.000637775 |
| Erigeron canadensis | Conyza_canadensis_scaffold:3 | 2 | CH_eca_479 | 2 | 2 | 0.000673083 |
| Eucalyptus grandis | Chr06 | 2 | CH_egr_727 | 3 | 10 | 0.000101593 |
| Gossypium hirsutum | D12 | 2 | CH_ghi_305 | 3 | 3 | 0.000000727242 |
| Gossypium raimondii | Chr08 | 2 | CH_gra_153 | 3 | 3 | 0.000000362147 |
| Helianthus annuus | HanXRQChr11 | 2 | CH_han_690 | 2 | 2 | 0.000579643 |
| Lupinus albus | Lalb_Chr22 | 2 | CH_lal_28 | 5 | 9 | 0.00000000000015054 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 2 | CH_lsa_453 | 2 | 2 | 0.000308404 |
| Magnolia biondii | Chr18 | 2 | CH_mbi_51 | 6 | 19 | 0.0000000000000760944 |
| Nicotiana tabacum | Nitab4.5_0000161 | 2 | CH_nta_18 | 5 | 13 | 0.0000000027918 |
| Nicotiana tabacum | Nitab4.5_0001615 | 2 | CH_nta_66 | 3 | 3 | 0.00000657425 |
| Olea europaea | chr6 | 2 | CH_oeu_93 | 3 | 5 | 0.00000149561 |
| Prunus persica | Pp04 | 2 | CH_ppe_42 | 6 | 8 | 1.01889e-17 |
| Pisum sativum | chr5LG3 | 2 | CH_psa_158 | 3 | 5 | 0.0000034276 |
| Papaver somniferum | NC_039359.1 | 2 | CH_pso_628 | 2 | 2 | 0.000472989 |
| Quercus lobata | 4 | 2 | CH_qlo_35 | 10 | 23 | 1.69031e-25 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_179 | 4 | 12 | 0.00000000141074 |
| Rhododendron simsii | chr01 | 2 | CH_rsi_434 | 2 | 2 | 0.000193592 |
| Striga asiatica | scaffold239 | 2 | CH_sas_40 | 3 | 7 | 0.00000967553 |
| Simmondsia chinensis | GWHAASQ00000003 | 2 | CH_sci_56 | 3 | 3 | 0.000000108744 |
| Sequoiadendron giganteum | chr8 | 2 | CH_sgi_78 | 8 | 14 | 3.04826e-22 |
| Solanum pennellii | Spenn-ch07 | 2 | CH_spe_563 | 2 | 2 | 0.00093406 |
| Solanum tuberosum | ST4.03ch07 | 2 | CH_stu_237 | 3 | 4 | 0.00000132339 |
| Trochodendron aralioides | group0 | 2 | CH_tar_138 | 3 | 3 | 0.000000189236 |
| Vaccinium macrocarpon | scaffold00295_Vaccinium_macrocarpon_Stevens_v1 | 2 | CH_vma_110 | 3 | 3 | 0.000000129529 |
| Vigna mungo | CM024076.1 | 2 | CH_vmu_131 | 3 | 4 | 0.00000300548 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |