Functional clusters

Information

  • Type MapMan
  • Description Solute transport.channels.VIC superfamily.cyclic nucleotide-gated cation channel (CNGC)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-8 1 CH_aar_59 4 4 0.0000000136362
Arabidopsis lyrata scaffold_3 1 CH_aly_206 3 4 0.0000297865
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 1 CH_arhy_289 6 69 0.00000112567
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 1 CH_arhy_302 4 8 0.00000140502
Arabidopsis thaliana Chr2 1 CH_ath_171 3 3 0.00000140355
Brassica carinata ChrC09 1 CH_bca_499 3 3 0.0000151481
Brassica carinata ChrB04 1 CH_bca_500 3 3 0.0000151481
Brassica carinata ChrB06 1 CH_bca_948 4 36 0.000461071
Brassica napus A05 1 CH_bna_403 3 3 0.0000167825
Brassica napus C05 1 CH_bna_404 3 3 0.0000167825
Brassica napus C01 1 CH_bna_474 3 4 0.0000671033
Brassica oleracea C5 1 CH_bol_223 3 4 0.0000260172
Brassica oleracea C1 1 CH_bol_254 3 5 0.0000650205
Brassica rapa A05 1 CH_bra_154 3 3 0.00000808678
Camellia sinensis var. sinensis Chr11 1 CH_camsi_411 3 3 0.00000485725
Camellia sinensis var. sinensis Chr13 1 CH_camsi_412 3 3 0.00000485725
Cannabis sativa NC_044374.1 1 CH_cansat_148 4 10 0.00000106459
Cicer arietinum L. Ca_LG7_v3 1 CH_car_105 3 3 0.00000880495
Corylus avellana 1 1 CH_cav_19 9 50 0.00000000000000705734
Corylus avellana 6 1 CH_cav_193 3 3 0.0000135792
Citrus clementina scaffold_9 1 CH_ccl_6 18 29 2.63875e-42
Cardamine hirsuta Chr4 1 CH_chi_62 5 6 0.0000000000270407
Carya illinoinensis Chr01 1 CH_cil_81 6 8 0.000000000000273518
Cucumis melo chr06 1 CH_cme_125 3 3 0.00000544744
Capsella rubella scaffold_3 1 CH_cru_210 3 3 0.0000106654
Cucumis sativus L. chr3 1 CH_csa_90 4 5 0.0000000266888
Daucus carota DCARv2_Chr5 1 CH_dca_391 3 5 0.00047329
Daucus carota DCARv2_Chr9 1 CH_dca_44 6 11 0.0000000000253965
Davidia involucrata GWHABJS00000010 1 CH_din_200 3 3 0.00000759399
Eucalyptus grandis Chr08 1 CH_egr_199 6 8 0.000000000000391646
Eucalyptus grandis Chr10 1 CH_egr_58 9 9 5.47861e-24
Fragaria x ananassa Fvb7-3 1 CH_fan_112 5 8 0.0000000320928
Fragaria x ananassa Fvb7-2 1 CH_fan_185 5 13 0.00000073333
Fragaria x ananassa Fvb7-1 1 CH_fan_232 6 40 0.00000290413
Fragaria x ananassa Fvb7-4 1 CH_fan_305 6 53 0.0000171064
Fragaria x ananassa Fvb7-1 1 CH_fan_349 4 9 0.0000522696
Fragaria vesca Fvb7 1 CH_fve_192 7 80 0.00000128299
Fragaria vesca Fvb7 1 CH_fve_63 9 75 0.0000000000880105
Glycine max Gm16 1 CH_gma_129 4 4 0.0000000134933
Glycine max Gm09 1 CH_gma_130 4 4 0.0000000134933
Helianthus annuus HanXRQChr17 1 CH_han_418 3 4 0.0000363618
Hydrangea macrophylla Hma1.2p1_0295F.1 1 CH_hma_81 3 6 0.00000740052
Lotus japonicus chr2 1 CH_lja_44 5 5 0.00000000000516516
Malus domestica Chr01 1 CH_mdo_42 10 55 0.00000000000000571234
Malus domestica Chr07 1 CH_mdo_71 7 18 0.00000000000149921
Manihot esculenta Chromosome04 1 CH_mes_138 4 4 0.00000000604904
Medicago truncatula chr6 1 CH_mtr_196 5 16 0.00000000245027
Petunia axillaris Peaxi162Scf00017 1 CH_pax_160 3 4 0.0000242252
Punica granatum NC_045133.1 1 CH_pgr_49 5 6 0.0000000000122199
Prunus persica Pp02 1 CH_ppe_31 10 16 1.64454e-20
Prunus persica Pp02 1 CH_ppe_373 3 3 0.000126711
Phaseolus vulgaris Chr04 1 CH_pvu_37 6 6 0.00000000000000261507
Quercus lobata 1 1 CH_qlo_163 6 7 0.000000000000302907
Quercus lobata 9 1 CH_qlo_167 7 16 0.000000000000457113
Quercus lobata 11 1 CH_qlo_259 7 36 0.000000000328146
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_458 4 10 0.0000385315
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_54 10 30 2.44648e-17
Rhododendron simsii chr01 1 CH_rsi_273 3 3 0.00000830787
Rhododendron simsii chr09 1 CH_rsi_274 3 3 0.00000830787
Salix brachista GWHAAZH00000012 1 CH_sbr_184 3 3 0.0000105487
Sechium edule LG07 1 CH_sed_39 5 6 0.0000000000766465
Sequoiadendron giganteum chr1 1 CH_sgi_293 5 11 0.0000000000390254
Sequoiadendron giganteum chr5 1 CH_sgi_985 3 8 0.0000724819
Solanum lycopersicum SL4.0ch05 1 CH_sly_266 3 4 0.0000235549
Solanum pennellii Spenn-ch05 1 CH_spe_250 3 5 0.0000287398
Tripterygium wilfordii NC_052249.1 1 CH_twi_82 4 5 0.0000000230076
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_172 3 3 0.0000072536
Vigna mungo CM024077.1 1 CH_vmu_31 5 6 0.0000000000159569
Zea mays 4 1 CH_zma_106 3 3 0.00000266676
Aethionema arabicum LG-8 2 CH_aar_59 4 4 0.0000000136362
Arabidopsis lyrata scaffold_3 2 CH_aly_206 3 4 0.0000297865
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.05 2 CH_arhy_289 6 69 0.00000112567
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.15 2 CH_arhy_302 4 8 0.00000140502
Arabidopsis thaliana Chr2 2 CH_ath_171 3 3 0.00000140355
Brassica carinata ChrC09 2 CH_bca_499 3 3 0.0000151481
Brassica carinata ChrB04 2 CH_bca_500 3 3 0.0000151481
Brassica carinata ChrB06 2 CH_bca_948 4 36 0.000461071
Brassica oleracea C5 2 CH_bol_223 3 4 0.0000260172
Brassica oleracea C1 2 CH_bol_254 3 5 0.0000650205
Brassica rapa A05 2 CH_bra_154 3 3 0.00000808678
Camellia sinensis var. sinensis Chr11 2 CH_camsi_411 3 3 0.00000485725
Camellia sinensis var. sinensis Chr13 2 CH_camsi_412 3 3 0.00000485725
Cannabis sativa NC_044374.1 2 CH_cansat_148 4 10 0.00000106459
Cicer arietinum L. Ca_LG7_v3 2 CH_car_105 3 3 0.00000880495
Corylus avellana 1 2 CH_cav_19 9 50 0.00000000000000705734
Corylus avellana 6 2 CH_cav_193 3 3 0.0000135792
Citrus clementina scaffold_9 2 CH_ccl_6 18 29 2.63875e-42
Cardamine hirsuta Chr4 2 CH_chi_62 5 6 0.0000000000270407
Carya illinoinensis Chr01 2 CH_cil_81 6 8 0.000000000000273518
Cucumis melo chr06 2 CH_cme_125 3 3 0.00000544744
Capsella rubella scaffold_3 2 CH_cru_210 3 3 0.0000106654
Cucumis sativus L. chr3 2 CH_csa_90 4 5 0.0000000266888
Daucus carota DCARv2_Chr5 2 CH_dca_391 3 5 0.00047329
Daucus carota DCARv2_Chr9 2 CH_dca_44 6 11 0.0000000000253965
Davidia involucrata GWHABJS00000010 2 CH_din_200 3 3 0.00000759399
Eucalyptus grandis Chr08 2 CH_egr_199 6 8 0.000000000000391646
Eucalyptus grandis Chr10 2 CH_egr_58 9 9 5.47861e-24
Eucalyptus grandis Chr05 2 CH_egr_808 3 5 0.000254523
Fragaria x ananassa Fvb7-3 2 CH_fan_112 5 8 0.0000000320928
Fragaria x ananassa Fvb7-2 2 CH_fan_185 5 13 0.00000073333
Fragaria x ananassa Fvb7-1 2 CH_fan_232 6 40 0.00000290413
Fragaria x ananassa Fvb7-4 2 CH_fan_305 6 53 0.0000171064
Fragaria x ananassa Fvb7-1 2 CH_fan_349 4 9 0.0000522696
Fragaria vesca Fvb7 2 CH_fve_192 7 80 0.00000128299
Fragaria vesca Fvb7 2 CH_fve_63 9 75 0.0000000000880105
Glycine max Gm16 2 CH_gma_129 4 4 0.0000000134933
Glycine max Gm09 2 CH_gma_130 4 4 0.0000000134933
Helianthus annuus HanXRQChr17 2 CH_han_418 3 4 0.0000363618
Hydrangea macrophylla Hma1.2p1_0295F.1 2 CH_hma_81 3 6 0.00000740052
Lotus japonicus chr2 2 CH_lja_44 5 5 0.00000000000516516
Malus domestica Chr01 2 CH_mdo_42 10 55 0.00000000000000571234
Malus domestica Chr07 2 CH_mdo_71 7 18 0.00000000000149921
Manihot esculenta Chromosome04 2 CH_mes_138 4 4 0.00000000604904
Petunia axillaris Peaxi162Scf00017 2 CH_pax_160 3 4 0.0000242252
Punica granatum NC_045133.1 2 CH_pgr_49 5 6 0.0000000000122199
Prunus persica Pp02 2 CH_ppe_31 10 16 1.64454e-20
Prunus persica Pp02 2 CH_ppe_373 3 3 0.000126711
Phaseolus vulgaris Chr04 2 CH_pvu_37 6 6 0.00000000000000261507
Quercus lobata 1 2 CH_qlo_163 6 7 0.000000000000302907
Quercus lobata 9 2 CH_qlo_167 7 16 0.000000000000457113
Quercus lobata 11 2 CH_qlo_259 7 36 0.000000000328146
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_458 4 10 0.0000385315
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_54 10 30 2.44648e-17
Rhododendron simsii chr01 2 CH_rsi_273 3 3 0.00000830787
Rhododendron simsii chr09 2 CH_rsi_274 3 3 0.00000830787
Salix brachista GWHAAZH00000012 2 CH_sbr_184 3 3 0.0000105487
Sechium edule LG07 2 CH_sed_39 5 6 0.0000000000766465
Sequoiadendron giganteum chr1 2 CH_sgi_293 5 11 0.0000000000390254
Sequoiadendron giganteum chr5 2 CH_sgi_985 3 8 0.0000724819
Solanum lycopersicum SL4.0ch05 2 CH_sly_266 3 4 0.0000235549
Solanum pennellii Spenn-ch05 2 CH_spe_250 3 5 0.0000287398
Tripterygium wilfordii NC_052249.1 2 CH_twi_82 4 5 0.0000000230076
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_172 3 3 0.0000072536
Vigna mungo CM024077.1 2 CH_vmu_31 5 6 0.0000000000159569
Zea mays 4 2 CH_zma_106 3 3 0.00000266676

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001