Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.APC superfamily.APC family.gamma-aminobutyric acid transporter (GABP)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr11 1 CH_acertr_117 4 17 0.0000000374826
Aquilegia oxysepala CHR04 1 CH_aox_336 2 2 0.000801989
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 1 CH_arhy_217 3 3 0.0000000752906
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 1 CH_arhy_741 2 2 0.000838273
Beta vulgaris Chr6_EL10_PGA_scaffold0 1 CH_bvu_227 2 2 0.000248375
Capsicum annuum PGAv.1.6.scaffold610 1 CH_can_275 2 2 0.0000826105
Cicer arietinum L. Ca_LG4_v3 1 CH_car_271 2 2 0.000466981
Carpinus fangiana Cfa07 1 CH_cfa_386 2 2 0.000757346
Fragaria x ananassa Fvb2-3 1 CH_fan_158 3 3 0.000000233679
Fragaria x ananassa Fvb2-2 1 CH_fan_159 3 3 0.000000233679
Fragaria vesca Fvb2 1 CH_fve_132 3 3 0.0000000520576
Glycine max Gm20 1 CH_gma_508 2 2 0.000379557
Medicago truncatula chr1 1 CH_mtr_612 2 2 0.000123259
Oryza sativa ssp. japonica chr01 1 CH_osa_24 5 9 0.000000000000154361
Pisum sativum chr6LG2 1 CH_psa_284 2 2 0.00015649
Papaver somniferum NC_039361.1 1 CH_pso_649 2 2 0.000630652
Phaseolus vulgaris Chr07 1 CH_pvu_353 2 2 0.000220418
Selaginella moellendorffii scaffold_3 1 CH_smo_42 3 3 0.00000109853
Trochodendron aralioides group8 1 CH_tar_553 2 2 0.000900549
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_368 2 2 0.000557543
Vigna mungo CM024071.1 1 CH_vmu_91 3 4 0.000000100197
Zea mays 3 1 CH_zma_81 3 5 0.000000392121
Acer truncatum chr11 2 CH_acertr_117 4 17 0.0000000374826
Aquilegia oxysepala CHR04 2 CH_aox_336 2 2 0.000801989
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.19 2 CH_arhy_217 3 3 0.0000000752906
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.09 2 CH_arhy_741 2 2 0.000838273
Beta vulgaris Chr6_EL10_PGA_scaffold0 2 CH_bvu_227 2 2 0.000248375
Capsicum annuum PGAv.1.6.scaffold610 2 CH_can_275 2 2 0.0000826105
Cicer arietinum L. Ca_LG4_v3 2 CH_car_271 2 2 0.000466981
Carpinus fangiana Cfa07 2 CH_cfa_386 2 2 0.000757346
Fragaria x ananassa Fvb2-3 2 CH_fan_158 3 3 0.000000233679
Fragaria x ananassa Fvb2-2 2 CH_fan_159 3 3 0.000000233679
Fragaria vesca Fvb2 2 CH_fve_132 3 3 0.0000000520576
Glycine max Gm20 2 CH_gma_508 2 2 0.000379557
Oryza sativa ssp. japonica chr01 2 CH_osa_24 5 9 0.000000000000154361
Pisum sativum chr6LG2 2 CH_psa_284 2 2 0.00015649
Papaver somniferum NC_039361.1 2 CH_pso_649 2 2 0.000630652
Phaseolus vulgaris Chr07 2 CH_pvu_353 2 2 0.000220418
Selaginella moellendorffii scaffold_3 2 CH_smo_42 3 3 0.00000109853
Trochodendron aralioides group8 2 CH_tar_553 2 2 0.000900549
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_368 2 2 0.000557543
Vigna mungo CM024071.1 2 CH_vmu_91 3 4 0.000000100197
Zea mays 3 2 CH_zma_81 3 5 0.000000392121

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001