Functional clusters

Information

  • Type MapMan
  • Description Solute transport.carrier-mediated transport.MFS superfamily.nitrate transporter (NRT2)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr3 1 CH_acertr_184 3 4 0.0000025044
Acer truncatum chr11 1 CH_acertr_185 3 4 0.0000025044
Aquilegia oxysepala CHR03 1 CH_aox_297 2 2 0.000481193
Aquilegia oxysepala CHR01 1 CH_aox_298 2 2 0.000481193
Brassica carinata ChrC01 1 CH_bca_298 4 13 0.000000312688
Brassica carinata ChrB08 1 CH_bca_381 3 3 0.00000178213
Brassica carinata ChrB01 1 CH_bca_450 3 4 0.00000712713
Beta vulgaris Chr7_EL10_PGA_scaffold5 1 CH_bvu_121 3 3 0.00000345401
Beta vulgaris Chr6_EL10_PGA_scaffold0 1 CH_bvu_61 4 6 0.00000000321676
Camellia sinensis var. sinensis Chr6 1 CH_camsi_881 2 2 0.000687821
Camellia sinensis var. sinensis Chr11 1 CH_camsi_882 2 2 0.000687821
Cannabis sativa NC_044375.1 1 CH_cansat_141 3 5 0.000000646683
Citrus clementina scaffold_8 1 CH_ccl_150 3 3 0.000000201881
Ceratophyllum demersum 4 1 CH_cde_242 2 2 0.000473878
Ceratophyllum demersum 5 1 CH_cde_243 2 2 0.000473878
Corchorus olitorius AWUE01018461.1 1 CH_col_120 2 2 0.000876296
Carica papaya supercontig_65 1 CH_cpa_393 2 2 0.000950661
Chenopodium quinoa C_Quinoa_Scaffold_2088 1 CH_cqu_232 3 3 0.0000018859
Chenopodium quinoa C_Quinoa_Scaffold_3429 1 CH_cqu_233 3 3 0.0000018859
Chenopodium quinoa C_Quinoa_Scaffold_2493 1 CH_cqu_264 3 4 0.00000754168
Chenopodium quinoa C_Quinoa_Scaffold_2716 1 CH_cqu_265 3 4 0.00000754168
Daucus carota DCARv2_Chr2 1 CH_dca_6 11 22 9.73277e-28
Davidia involucrata GWHABJS00000010 1 CH_din_509 2 2 0.000750188
Erigeron canadensis Conyza_canadensis_scaffold:9 1 CH_eca_59 4 5 0.0000000000474338
Erythranthe guttata scaffold_2 1 CH_egut_248 3 5 0.0000227322
Erythranthe guttata scaffold_4 1 CH_egut_60 5 7 0.00000000000569622
Fragaria x ananassa Fvb4-3 1 CH_fan_207 4 39 0.00000156032
Fragaria vesca Fvb4 1 CH_fve_477 2 2 0.000883652
Glycine max Gm12 1 CH_gma_617 2 2 0.00079707
Helianthus annuus HanXRQChr01 1 CH_han_181 4 7 0.00000000433034
Helianthus annuus HanXRQChr11 1 CH_han_71 5 7 0.000000000000451916
Lonicera japonica GWHAAZE00000001 1 CH_lonja_276 3 7 0.00000376447
Lactuca sativa Lsat_1_v8_lg_1 1 CH_lsa_11 8 11 6.34171e-23
Magnolia biondii Chr18 1 CH_mbi_535 2 2 0.000291397
Malus domestica Chr11 1 CH_mdo_750 2 2 0.000796344
Malus domestica Chr03 1 CH_mdo_751 2 2 0.000796344
Manihot esculenta Chromosome11 1 CH_mes_192 3 4 0.000000447414
Olea europaea chr8 1 CH_oeu_388 2 2 0.000533789
Oryza sativa ssp. japonica chr02 1 CH_osa_326 2 2 0.000316874
Petunia axillaris Peaxi162Scf00115 1 CH_pax_10 6 6 1.79255e-17
Prunus persica Pp06 1 CH_ppe_466 2 2 0.000447577
Populus trichocarpa Chr09 1 CH_ptr_511 2 2 0.000578001
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_762 2 2 0.000597979
Rosa chinensis RcHm_v2.0_Chr4 1 CH_rch_763 2 2 0.000597979
Salvia bowleyana GWHASIU00000006 1 CH_sbo_154 3 3 0.000000173889
Salix brachista GWHAAZH00000015 1 CH_sbr_344 2 2 0.000378084
Sequoiadendron giganteum chr1 1 CH_sgi_305 4 4 0.000000000072839
Sequoiadendron giganteum chr6 1 CH_sgi_615 3 4 0.00000170846
Solanum lycopersicum SL4.0ch11 1 CH_sly_158 3 3 0.000000103353
Solanum pennellii Spenn-ch11 1 CH_spe_152 3 3 0.000000103868
Solanum tuberosum ST4.03ch11 1 CH_stu_261 3 5 0.00000330801
Theobroma cacao Chromosome_9 1 CH_tca_171 3 3 0.000000281615
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_337 2 2 0.000278772
Zea mays 4 1 CH_zma_259 2 2 0.000511313
Acer truncatum chr3 2 CH_acertr_184 3 4 0.0000025044
Acer truncatum chr11 2 CH_acertr_185 3 4 0.0000025044
Aquilegia oxysepala CHR03 2 CH_aox_297 2 2 0.000481193
Aquilegia oxysepala CHR01 2 CH_aox_298 2 2 0.000481193
Brassica carinata ChrC01 2 CH_bca_298 4 13 0.000000312688
Brassica carinata ChrB08 2 CH_bca_381 3 3 0.00000178213
Brassica carinata ChrB01 2 CH_bca_450 3 4 0.00000712713
Beta vulgaris Chr7_EL10_PGA_scaffold5 2 CH_bvu_121 3 3 0.00000345401
Beta vulgaris Chr6_EL10_PGA_scaffold0 2 CH_bvu_61 4 6 0.00000000321676
Camellia sinensis var. sinensis Chr6 2 CH_camsi_881 2 2 0.000687821
Camellia sinensis var. sinensis Chr11 2 CH_camsi_882 2 2 0.000687821
Cannabis sativa NC_044375.1 2 CH_cansat_141 3 5 0.000000646683
Citrus clementina scaffold_8 2 CH_ccl_150 3 3 0.000000201881
Ceratophyllum demersum 4 2 CH_cde_242 2 2 0.000473878
Ceratophyllum demersum 5 2 CH_cde_243 2 2 0.000473878
Corchorus olitorius AWUE01018461.1 2 CH_col_120 2 2 0.000876296
Carica papaya supercontig_65 2 CH_cpa_393 2 2 0.000950661
Chenopodium quinoa C_Quinoa_Scaffold_2088 2 CH_cqu_232 3 3 0.0000018859
Chenopodium quinoa C_Quinoa_Scaffold_3429 2 CH_cqu_233 3 3 0.0000018859
Chenopodium quinoa C_Quinoa_Scaffold_2493 2 CH_cqu_264 3 4 0.00000754168
Chenopodium quinoa C_Quinoa_Scaffold_2716 2 CH_cqu_265 3 4 0.00000754168
Daucus carota DCARv2_Chr2 2 CH_dca_6 11 22 9.73277e-28
Davidia involucrata GWHABJS00000010 2 CH_din_509 2 2 0.000750188
Erigeron canadensis Conyza_canadensis_scaffold:9 2 CH_eca_59 4 5 0.0000000000474338
Erythranthe guttata scaffold_2 2 CH_egut_248 3 5 0.0000227322
Erythranthe guttata scaffold_4 2 CH_egut_60 5 7 0.00000000000569622
Fragaria x ananassa Fvb4-3 2 CH_fan_207 4 39 0.00000156032
Fragaria vesca Fvb4 2 CH_fve_477 2 2 0.000883652
Glycine max Gm12 2 CH_gma_617 2 2 0.00079707
Helianthus annuus HanXRQChr01 2 CH_han_181 4 7 0.00000000433034
Helianthus annuus HanXRQChr11 2 CH_han_71 5 7 0.000000000000451916
Lotus japonicus chr3 2 CH_lja_375 2 2 0.000429046
Lonicera japonica GWHAAZE00000001 2 CH_lonja_276 3 7 0.00000376447
Lactuca sativa Lsat_1_v8_lg_1 2 CH_lsa_11 8 11 6.34171e-23
Magnolia biondii Chr18 2 CH_mbi_535 2 2 0.000291397
Malus domestica Chr11 2 CH_mdo_750 2 2 0.000796344
Malus domestica Chr03 2 CH_mdo_751 2 2 0.000796344
Manihot esculenta Chromosome11 2 CH_mes_192 3 4 0.000000447414
Olea europaea chr8 2 CH_oeu_388 2 2 0.000533789
Oryza sativa ssp. japonica chr02 2 CH_osa_326 2 2 0.000316874
Petunia axillaris Peaxi162Scf00115 2 CH_pax_10 6 6 1.79255e-17
Prunus persica Pp06 2 CH_ppe_466 2 2 0.000447577
Populus trichocarpa Chr09 2 CH_ptr_511 2 2 0.000578001
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_762 2 2 0.000597979
Rosa chinensis RcHm_v2.0_Chr4 2 CH_rch_763 2 2 0.000597979
Salvia bowleyana GWHASIU00000006 2 CH_sbo_154 3 3 0.000000173889
Salix brachista GWHAAZH00000015 2 CH_sbr_344 2 2 0.000378084
Sequoiadendron giganteum chr1 2 CH_sgi_305 4 4 0.000000000072839
Sequoiadendron giganteum chr6 2 CH_sgi_615 3 4 0.00000170846
Solanum lycopersicum SL4.0ch11 2 CH_sly_158 3 3 0.000000103353
Solanum pennellii Spenn-ch11 2 CH_spe_152 3 3 0.000000103868
Solanum tuberosum ST4.03ch11 2 CH_stu_261 3 5 0.00000330801
Theobroma cacao Chromosome_9 2 CH_tca_171 3 3 0.000000281615
Vaccinium macrocarpon chr1_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_337 2 2 0.000278772
Zea mays 4 2 CH_zma_259 2 2 0.000511313

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001