Functional clusters

Information

  • Type MapMan
  • Description Solute transport.primary active transport.ABC superfamily

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Fragaria x ananassa Fvb4-3 1 CH_fan_107 5 5 0.0000000249709
Fragaria x ananassa Fvb4-2 1 CH_fan_380 6 34 0.0000920645
Glycine max Gm03 1 CH_gma_337 4 5 0.0000467915
Malus domestica Chr05 1 CH_mdo_397 4 6 0.0000481792
Nelumbo nucifera chr3 1 CH_nnu_296 6 49 0.0000736345
Prunus persica Pp08 1 CH_ppe_247 5 9 0.00000370141
Eucalyptus grandis Chr11 2 CH_egr_289 8 18 0.000000000307568
Fragaria x ananassa Fvb4-3 2 CH_fan_107 5 5 0.0000000249709
Fragaria x ananassa Fvb4-2 2 CH_fan_380 6 34 0.0000920645
Glycine max Gm03 2 CH_gma_337 4 5 0.0000467915
Malus domestica Chr05 2 CH_mdo_397 4 6 0.0000481792
Nelumbo nucifera chr3 2 CH_nnu_296 6 49 0.0000736345
Prunus persica Pp08 2 CH_ppe_247 5 9 0.00000370141

Available child term results

Ontology identifier Description Number of clusters
24.1.3.1.1 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCB transporter 114
24.1.3.1.2 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCC transporter 175
24.1.3.1.3 Solute transport.primary active transport.ABC superfamily.ABC1 family.subfamily ABCD transporter 12
24.1.3.2 Solute transport.primary active transport.ABC superfamily.ABC2 family 2
24.1.3.2.1 Solute transport.primary active transport.ABC superfamily.ABC2 family.subfamily ABCA transporter 184
24.1.3.2.2 Solute transport.primary active transport.ABC superfamily.ABC2 family.subfamily ABCG transporter 307

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001